Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 4.2e-162 574.7 309 100.0
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 4.3e-82 308.9 307 52.4
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.3e-78 297.4 313 56.5
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-74 284.3 235 58.3
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 9.7e-74 281.2 306 51.6
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.7e-73 280.4 303 48.8
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 4.8e-73 278.9 306 50.7
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 4.1e-72 275.8 319 47.6
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.6e-71 273.9 307 49.8
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 2.6e-71 273.1 307 49.2
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.9e-71 271.9 306 50.0
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.0e-70 271.2 317 47.9
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.3e-70 270.8 309 50.2
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 2.2e-70 270.0 293 49.8
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 2.2e-70 270.0 313 48.6
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.9e-70 269.6 317 48.6
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 8.5e-70 268.1 309 50.2
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 1.5e-69 267.3 305 50.8
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 2.5e-69 266.5 312 47.1
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 4.2e-69 265.8 309 49.8
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.6e-68 263.8 231 56.7
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 4.7e-68 262.3 312 45.5
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.8e-67 260.4 309 47.9
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 4.0e-67 259.2 312 45.8
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.1e-66 257.7 313 46.3
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.1e-66 257.7 317 47.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.1e-66 257.7 309 46.9
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 3.3e-66 256.1 299 47.2
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 3.3e-66 256.1 299 47.8
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 4.4e-66 255.8 300 49.0
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 4.4e-66 255.8 299 47.8
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.7e-66 255.4 308 48.1
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 5.7e-66 255.4 298 47.0
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.7e-65 253.8 302 47.7
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 6.3e-65 251.9 302 47.4
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.8e-64 250.4 309 46.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 3.1e-64 249.6 305 46.9
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 4.1e-64 249.2 316 47.5
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 4.5e-63 245.7 306 47.4
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 5.9e-63 245.4 301 46.5
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 2.9e-62 243.0 301 48.5
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.9e-62 243.0 306 45.8
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 6.5e-62 241.9 315 46.7
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.5e-61 240.7 288 46.2
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 3.2e-61 239.6 223 57.8
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.2e-61 239.6 321 45.2
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.2e-61 239.6 288 46.2
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 9.4e-61 238.0 302 46.4
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 9.4e-61 238.0 308 46.1
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 1.6e-60 237.3 236 53.4
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.1e-60 236.9 308 44.8
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 2.7e-60 236.5 310 45.8
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 6.1e-60 235.3 309 44.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.8e-59 233.8 223 52.9
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.8e-59 233.8 315 45.4
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 2.3e-59 233.4 310 44.8
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 4.0e-59 232.6 308 43.8
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 8.8e-59 231.5 316 43.4
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 8.8e-59 231.5 280 48.2
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 8.8e-59 231.5 277 47.3
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.5e-58 230.7 309 44.3
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 2.0e-58 230.3 297 44.1
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 9.8e-58 228.0 304 46.4
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 2.2e-57 226.9 227 52.9
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 3.7e-57 226.1 307 45.6
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 3.7e-57 226.1 226 52.7
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 8.3e-57 224.9 231 51.5
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 7.0e-56 221.9 304 43.1
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 9.1e-56 221.5 278 42.4
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 3.5e-55 219.5 302 44.4
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 1.7e-54 217.2 286 45.8
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 3.8e-54 216.1 305 44.3
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 8.5e-54 214.9 313 41.9
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.9e-53 213.8 216 50.5
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.2e-52 211.1 309 41.7
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 8.0e-52 208.4 226 49.1
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.0e-51 208.0 244 47.1
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.0e-51 208.0 226 49.1
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 4.0e-51 206.1 227 48.0
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.7e-49 200.7 234 47.4
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.4e-48 197.6 288 43.1
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 4.1e-48 196.1 301 41.2
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 4.1e-48 196.1 311 37.6
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 5.4e-48 195.7 250 47.6
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 2.7e-47 193.4 286 41.3
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.3e-46 190.3 285 42.8
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.9e-46 189.9 230 42.6
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 5.0e-46 189.1 254 43.3
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 5.0e-46 189.1 222 44.6
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 6.6e-46 188.7 260 43.8
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.5e-45 187.6 216 46.8
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.5e-45 186.8 317 39.1
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 1.0e-43 181.4 274 43.8
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 6.8e-43 178.7 251 45.0
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 6.8e-43 178.7 304 38.2
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.5e-42 177.6 262 42.7
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.7e-41 174.1 271 45.0
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 2.2e-41 173.7 271 45.0
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 3.5e-39 166.4 243 46.1
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.7e-38 164.1 187 46.0
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 1.1e-37 161.4 281 38.4
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 4.3e-37 159.5 193 47.7
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.7e-33 147.5 135 56.3
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 8.3e-33 145.2 228 41.2
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-32 144.4 187 47.1
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-32 144.4 153 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 2.4e-32 143.7 232 36.2
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 3.2e-32 143.3 303 34.3
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 3.5e-31 139.8 243 35.8
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 2.5e-29 133.7 268 36.6
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 6.2e-28 129.0 216 36.6
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 8.1e-28 128.6 105 57.1
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 2.3e-27 127.1 145 42.8
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.1e-27 126.7 108 54.6
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 3.2e-24 116.7 101 57.4
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.3e-22 110.5 274 32.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.9e-22 109.8 290 34.8
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 5.1e-22 109.4 231 33.8
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.8e-19 99.0 199 36.7
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.5e-18 97.8 138 38.4
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.6e-18 97.1 63 73.0
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.6e-18 97.1 63 73.0
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 2.6e-18 97.1 123 45.5
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 8.1e-12 75.5 94 45.7
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.4e-11 74.7 65 50.8
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 5.2e-11 72.8 132 31.1
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 3.4e-10 70.1 150 28.0


User provided reference genes

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