Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1575.1 752 100.0
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1232.6 754 76.8
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1218.4 754 74.0
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1218.0 754 74.7
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1214.5 754 74.4
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1210.3 754 73.9
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1209.5 754 73.6
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1200.3 760 73.3
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1200.3 755 73.5
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1194.9 754 72.8
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1193.7 755 73.1
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1190.6 754 72.3
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1186.4 755 73.2
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1183.7 741 72.6
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1182.9 754 71.8
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1182.5 754 72.1
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1181.8 755 72.2
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1181.8 754 72.0
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1179.5 755 73.4
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1178.3 756 72.1
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1177.9 754 72.0
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1177.2 755 72.1
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1176.4 755 72.1
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1176.4 755 72.1
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1174.8 755 71.7
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1172.9 755 71.8
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1171.0 755 71.8
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1170.6 755 72.3
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1169.8 753 72.2
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1168.3 755 71.4
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1167.5 755 71.4
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1164.8 757 72.4
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1164.8 755 70.6
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1163.3 755 71.7
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1161.4 755 70.7
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1160.6 755 71.1
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1154.0 754 70.4
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1154.0 755 71.1
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1152.9 755 70.6
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1152.9 754 71.2
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1152.1 755 70.2
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1149.8 755 69.8
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1149.4 755 70.9
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1147.9 755 69.9
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1147.9 755 69.9
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1144.8 795 67.4
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1144.0 755 70.1
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1141.3 755 70.1
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1139.4 754 69.4
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1138.3 755 70.3
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1136.3 755 69.8
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 0.0e+00 1134.8 745 71.1
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 0.0e+00 1134.0 738 71.1
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1132.1 755 69.3
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1129.8 755 69.4
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1128.6 772 68.7
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1122.1 755 68.6
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1121.7 756 68.4
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 0.0e+00 1119.8 770 68.6
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 0.0e+00 1119.4 755 69.3
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1118.2 755 68.1
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1115.5 755 68.2
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1115.1 756 68.8
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 0.0e+00 1115.1 755 69.0
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1112.4 754 68.6
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 0.0e+00 1111.3 775 67.5
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 0.0e+00 1110.5 743 67.7
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1109.4 755 67.9
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1109.0 755 67.5
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1107.0 754 68.4
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1105.5 689 73.7
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1104.0 755 68.9
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1104.0 755 68.9
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1100.1 753 68.1
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1100.1 753 68.1
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 0.0e+00 1098.2 759 68.4
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 0.0e+00 1097.0 659 76.5
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1095.5 753 68.7
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1091.6 705 71.9
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1091.6 744 68.5
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1083.9 756 66.9
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 0.0e+00 1082.8 757 66.2
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 0.0e+00 1082.8 786 64.8
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1080.9 756 68.5
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 0.0e+00 1080.5 795 65.2
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 0.0e+00 1075.8 756 66.1
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 5.6e-309 1063.9 736 68.6
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 2.4e-307 1058.5 759 65.5
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 1.1e-304 1049.7 749 65.4
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 1.9e-304 1048.9 746 66.5
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 2.1e-303 1045.4 755 64.9
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 6.0e-303 1043.9 743 66.5
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 3.0e-302 1041.6 743 65.9
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 5.6e-301 1037.3 743 66.2
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 1.6e-300 1035.8 751 65.4
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.8e-300 1035.0 754 63.7
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 8.1e-300 1033.5 754 64.7
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 2.4e-299 1031.9 749 64.4
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 2.4e-299 1031.9 749 64.4
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 5.3e-299 1030.8 741 65.0
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 9.0e-299 1030.0 749 64.4
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 5.8e-298 1027.3 741 65.0
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 1.4e-296 1022.7 742 65.2
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 1.9e-296 1022.3 749 64.4
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 1.3e-292 1009.6 756 62.6
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 2.4e-291 1005.4 756 61.1
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.2e-290 1003.0 755 62.1
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 6.0e-287 990.7 736 62.0
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 7.9e-287 990.3 759 61.7
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.0e-282 975.7 761 61.9
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.4e-280 969.5 754 60.2
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 9.3e-280 966.8 639 70.0
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 3.7e-276 954.9 596 73.3
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 6.1e-271 937.6 596 70.8
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 5.5e-264 914.4 714 63.0
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 2.9e-257 892.1 597 66.8
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.6e-255 885.2 552 73.0
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.6e-250 869.8 546 72.9
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 3.1e-243 845.5 571 68.5
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 4.1e-235 818.5 572 64.5
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 9.2e-235 817.4 557 65.9
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.2e-218 763.8 566 63.6
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.1e-208 730.7 553 62.2
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 4.6e-202 708.8 602 54.0
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 7.8e-202 708.0 794 46.6
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 5.6e-200 701.8 608 56.1
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 1.7e-148 530.8 782 39.5
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 5.8e-112 409.5 383 52.0
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 1.6e-74 285.0 263 57.0
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.8e-73 281.6 187 70.6
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 1.0e-63 249.2 223 56.1
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.4e-46 189.5 272 44.9
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.8e-44 185.3 645 25.0
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.2e-42 178.3 635 25.7
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 1.3e-31 142.5 241 38.2
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.2e-29 136.0 154 48.1
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.1e-25 119.8 94 63.8
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.7e-19 100.5 58 77.6
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 7.5e-19 100.1 190 39.5
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.1e-17 93.2 123 43.9
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 5.9e-16 90.5 57 73.7
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 7.7e-16 90.1 57 73.7
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 4.2e-14 84.3 65 66.2
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 6.1e-13 80.5 46 76.1
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 6.1e-13 80.5 46 76.1
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 1.3e-10 72.8 243 24.3
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 4.9e-10 70.9 230 26.1
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 5.4e-09 67.4 251 21.5
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 9.1e-09 66.6 265 21.5
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.6e-08 65.9 299 22.1
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 4.5e-08 64.3 276 22.1
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.3e-07 62.8 263 22.8
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 1.7e-07 62.4 291 20.6
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 2.3e-07 62.0 40 70.0
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 3.8e-07 61.2 264 21.6
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 3.8e-07 61.2 215 27.9
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 3.8e-07 61.2 263 23.2
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 5.0e-07 60.8 253 22.5
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 5.0e-07 60.8 274 21.2
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 5.0e-07 60.8 38 65.8
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 6.6e-07 60.5 262 21.4
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 8.6e-07 60.1 272 22.1
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 1.1e-06 59.7 270 21.1
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 1.5e-06 59.3 251 21.9
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 1.9e-06 58.9 237 21.5
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.9e-06 58.9 34 73.5
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 2.5e-06 58.5 264 22.0
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 5.5e-06 57.4 264 23.1
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 9.5e-06 56.6 269 21.2
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 9.5e-06 56.6 269 21.2
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 9.5e-06 56.6 40 70.0
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 9.5e-06 56.6 251 21.5


User provided reference genes

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