Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 5.3e-125 451.1 231 100.0
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 4.8e-86 321.6 235 73.2
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.7e-76 289.3 233 66.5
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 5.6e-74 281.6 226 65.0
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.9e-72 274.2 233 63.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.3e-70 270.4 226 65.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.2e-70 269.6 227 63.0
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.2e-70 269.6 228 64.0
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.4e-70 268.1 228 64.0
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.1e-69 267.3 230 61.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.4e-69 266.9 228 61.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-69 266.9 228 63.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.9e-69 266.5 228 61.4
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 4.1e-69 265.4 227 63.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 5.4e-69 265.0 229 62.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 9.2e-69 264.2 226 61.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-68 263.8 227 62.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.2e-68 263.8 227 62.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 4.6e-68 261.9 230 60.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.3e-67 260.4 205 66.8
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.7e-67 260.0 226 61.9
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.9e-67 258.8 225 60.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 5.0e-67 258.5 228 59.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.0e-67 258.5 200 67.0
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.6e-67 258.1 227 62.1
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.6e-67 258.1 226 61.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 6.6e-67 258.1 228 59.6
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 6.6e-67 258.1 228 59.6
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 8.6e-67 257.7 227 62.6
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.1e-66 257.3 227 60.8
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.5e-66 256.9 228 61.8
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 2.5e-66 256.1 228 59.2
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.5e-66 256.1 227 61.7
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.3e-66 255.8 227 61.2
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.3e-66 255.8 229 60.7
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 4.3e-66 255.4 214 62.6
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.6e-66 255.0 226 62.4
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 7.3e-66 254.6 232 59.1
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 7.3e-66 254.6 228 61.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 9.5e-66 254.2 226 61.9
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.6e-65 253.4 199 66.3
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.8e-65 252.7 227 61.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.6e-65 252.3 227 61.7
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.2e-65 251.5 176 72.7
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 6.2e-65 251.5 227 58.1
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.0e-65 251.1 200 66.5
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 8.0e-65 251.1 226 59.7
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.1e-64 250.8 232 60.3
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.8e-64 250.0 226 59.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.0e-64 248.8 230 60.4
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.0e-64 248.8 213 62.4
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 5.2e-64 248.4 239 57.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.2e-63 247.3 223 63.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.2e-63 247.3 225 60.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.5e-63 246.9 234 59.8
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.6e-63 246.1 197 66.5
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.6e-63 246.1 232 58.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 3.4e-63 245.7 233 60.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.3e-62 243.8 227 60.4
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.7e-62 243.4 174 71.8
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.2e-62 243.0 229 58.1
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.9e-62 242.7 232 60.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.9e-62 242.7 177 70.1
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.9e-62 242.7 225 61.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 4.9e-62 241.9 173 69.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 8.3e-62 241.1 171 69.6
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.1e-61 240.7 231 58.4
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.9e-61 240.0 169 69.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.4e-61 239.6 201 64.7
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.4e-61 239.6 229 60.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.2e-61 239.2 166 69.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 3.2e-61 239.2 227 57.7
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.1e-61 238.8 226 59.3
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 5.4e-61 238.4 222 61.3
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 5.4e-61 238.4 232 61.2
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 7.0e-61 238.0 235 57.9
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.6e-60 236.9 201 63.2
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.7e-60 236.1 202 63.4
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 3.5e-60 235.7 198 62.6
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 3.5e-60 235.7 203 65.0
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.0e-60 235.0 225 57.8
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 7.8e-60 234.6 202 63.4
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 7.8e-60 234.6 228 58.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.8e-60 234.6 218 60.1
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 7.8e-60 234.6 203 62.1
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.7e-59 233.4 227 58.6
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.7e-59 233.4 227 58.6
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.7e-59 233.4 233 54.5
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.3e-59 233.0 231 58.0
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 3.0e-59 232.6 229 59.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 3.0e-59 232.6 228 58.8
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.0e-59 232.6 229 59.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 3.9e-59 232.3 233 55.4
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 6.6e-59 231.5 229 56.8
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 8.6e-59 231.1 213 60.6
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 8.6e-59 231.1 228 57.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 8.6e-59 231.1 201 62.2
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.9e-58 229.9 229 58.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.5e-58 229.6 231 58.9
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.3e-58 229.2 200 61.5
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.6e-58 228.4 228 58.3
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.3e-58 228.0 227 55.9
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-57 226.9 156 73.1
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 2.1e-57 226.5 231 58.4
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.8e-57 226.1 199 59.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.8e-57 226.1 231 55.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.6e-57 225.7 169 65.7
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 3.6e-57 225.7 201 58.2
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 4.7e-57 225.3 213 58.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.1e-57 224.6 171 64.3
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.8e-56 223.4 201 57.7
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.1e-56 222.6 202 61.9
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.0e-56 222.2 230 53.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 4.0e-56 222.2 235 56.2
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.2e-56 221.9 168 65.5
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-53 213.8 230 52.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.4e-53 213.8 200 57.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-53 213.0 156 70.5
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 6.0e-52 208.4 159 67.3
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.0e-51 207.6 212 55.7
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 3.9e-51 205.7 156 70.5
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 6.6e-51 204.9 166 64.5
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.1e-50 204.1 221 52.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 9.5e-50 201.1 213 54.9
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-48 197.2 227 52.0
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.4e-48 197.2 227 52.0
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 2.4e-48 196.4 134 73.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.4e-48 196.4 175 60.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.0e-48 195.7 205 55.1
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 9.9e-47 191.0 202 53.0
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.1e-45 184.9 202 51.0
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 9.2e-45 184.5 231 47.6
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.2e-44 184.1 224 49.1
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.5e-44 182.6 208 50.5
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.8e-41 172.9 128 66.4
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 4.0e-40 169.1 156 57.1
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.4e-39 166.0 109 75.2
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.8e-39 165.2 160 56.9
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 7.6e-39 164.9 225 45.3
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.0e-35 154.5 99 77.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.0e-31 140.2 162 48.1
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.8e-31 138.7 153 52.3
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.3e-30 137.5 116 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.9e-30 136.3 140 52.9
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-29 134.4 99 62.6
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.2e-29 132.5 147 53.1
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.9e-28 128.3 140 50.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.9e-27 125.9 131 52.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.5e-23 114.0 80 70.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.7e-20 103.2 71 74.6
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.8e-17 92.4 64 75.0
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 6.9e-16 88.6 134 38.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 3.4e-15 86.3 95 52.6
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 3.4e-15 86.3 95 52.6
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.6e-15 85.1 63 61.9
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 9.3e-13 78.2 103 40.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.8e-11 73.9 105 40.0


User provided reference genes

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