Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.1e-102 375.2 193 100.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.5e-59 233.4 190 67.4
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.9e-59 233.0 183 68.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 5.5e-59 231.5 183 68.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 9.4e-59 230.7 181 69.6
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 8.0e-58 227.6 190 65.3
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 8.0e-58 227.6 175 68.6
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.4e-57 226.9 188 66.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.0e-57 225.7 181 67.4
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.9e-57 225.3 181 68.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 8.8e-57 224.2 181 67.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.5e-56 223.4 181 67.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.0e-56 223.0 186 66.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.6e-56 222.6 178 68.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.6e-56 222.6 185 65.9
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 3.3e-56 222.2 181 66.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.3e-56 222.2 195 64.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.4e-56 221.9 181 65.7
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 5.7e-56 221.5 181 66.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.7e-56 221.5 184 64.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.7e-56 221.5 197 62.9
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 7.4e-56 221.1 177 67.8
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.3e-55 220.3 189 65.6
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.3e-55 220.3 178 68.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.7e-55 219.9 176 67.6
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 6.3e-55 218.0 180 65.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.1e-54 217.2 181 64.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.1e-54 217.2 185 62.2
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-54 217.2 191 62.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.4e-54 216.9 177 67.2
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.8e-54 216.5 189 62.4
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.8e-54 216.5 176 65.9
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 4.1e-54 215.3 176 63.1
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.1e-54 215.3 189 64.0
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.0e-54 214.5 191 61.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 9.1e-54 214.2 191 64.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.0e-53 213.0 186 61.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.0e-53 213.0 193 61.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.5e-53 212.2 185 62.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.5e-53 211.8 190 61.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 5.9e-53 211.5 187 64.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 7.7e-53 211.1 186 62.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.3e-52 210.3 185 62.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.7e-52 209.9 188 60.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.5e-52 208.0 216 56.5
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.5e-51 206.1 180 62.2
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.2e-51 205.7 181 61.9
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.2e-51 205.7 180 60.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.2e-50 203.8 181 63.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.1e-50 203.0 188 61.2
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.7e-50 201.8 183 60.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 6.1e-50 201.4 167 65.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 8.0e-50 201.1 188 61.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.4e-49 200.3 182 58.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.8e-49 199.9 182 58.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.2e-49 198.4 185 61.1
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.2e-49 198.4 179 62.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 6.8e-49 198.0 182 57.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.5e-48 196.8 240 50.8
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.4e-48 195.3 181 59.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 5.7e-48 194.9 190 58.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.4e-46 190.3 196 57.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.4e-46 189.5 187 56.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.4e-46 189.5 192 54.7
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.1e-46 188.7 186 59.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.2e-45 187.2 176 59.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.6e-45 186.8 189 56.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.5e-45 185.7 192 54.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.3e-44 183.7 192 53.1
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.8e-44 182.2 174 59.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 8.5e-44 181.0 179 56.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-43 180.6 134 74.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 5.5e-43 178.3 170 58.2
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-42 176.4 172 59.3
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.6e-42 175.6 185 51.9
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.0e-41 174.1 166 59.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.4e-41 173.7 185 51.4
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-41 172.9 182 53.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 5.2e-41 171.8 156 58.3
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 8.8e-41 171.0 177 57.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.6e-40 169.5 134 69.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.3e-39 167.2 127 69.3
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.7e-39 166.8 183 51.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.1e-38 164.1 136 65.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-38 163.3 156 59.6
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.4e-38 162.9 134 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.1e-38 162.2 165 50.9
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.1e-38 162.2 183 51.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 9.1e-38 161.0 175 52.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.5e-37 158.7 183 51.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.5e-37 158.7 124 70.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.5e-35 153.7 174 49.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-35 153.7 178 50.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.5e-35 153.7 183 50.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-35 152.9 180 48.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.5e-35 152.9 175 50.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.3e-35 152.5 175 50.3
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.2e-35 152.1 178 49.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.6e-34 150.2 176 51.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.8e-34 149.4 206 48.1
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-33 147.1 174 50.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 4.0e-33 145.6 178 47.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 8.9e-33 144.4 181 47.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 8.9e-33 144.4 181 47.5
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.9e-33 144.4 182 47.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-31 140.2 114 66.7
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.9e-31 138.7 170 47.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 3.2e-30 136.0 170 45.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.5e-29 132.5 136 56.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.6e-29 132.1 135 52.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.0e-28 128.6 125 59.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 8.6e-28 127.9 142 53.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-26 124.0 184 42.4
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.6e-26 123.6 138 52.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.8e-26 122.9 179 44.7
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 4.7e-26 122.1 188 42.6
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-25 120.9 119 56.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.2e-25 118.6 175 41.1
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.9e-25 117.9 133 51.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-23 113.6 199 39.2
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.2e-23 113.2 153 45.8
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.7e-23 112.5 162 46.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 3.7e-23 112.5 181 39.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 6.4e-23 111.7 181 39.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-22 110.9 186 39.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.1e-22 110.9 179 40.2
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.4e-22 110.5 184 39.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.4e-22 109.8 179 38.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.5e-21 105.9 128 48.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.3e-20 103.2 119 50.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-19 100.5 143 47.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-18 97.4 184 37.5
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 4.7e-18 95.5 57 86.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.4e-17 94.0 57 84.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.8e-17 93.6 57 86.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.3e-17 93.2 188 34.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.3e-17 93.2 57 84.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.4e-15 85.1 176 34.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.1e-14 84.3 56 75.0
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.1e-14 84.3 82 58.5
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-14 83.6 128 42.2
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-14 83.6 57 75.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 7.1e-14 81.6 129 39.5
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 9.2e-14 81.3 159 34.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-12 77.4 99 49.5
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.3e-12 77.4 41 92.7
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.6e-10 70.5 82 52.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.6e-08 63.2 72 48.6
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-08 62.4 45 62.2


User provided reference genes

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