Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 4.1e-170 601.3 298 100.0
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.6e-143 511.1 298 83.6
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 2.0e-140 502.7 298 82.2
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 5.8e-140 501.1 293 83.3
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 5.8e-140 501.1 292 82.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 1.3e-139 500.0 299 81.3
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 81.2
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 82.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.9e-139 498.8 296 82.1
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.9e-139 498.0 293 82.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 8.3e-139 497.3 296 79.7
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.1e-138 496.9 292 81.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 2.4e-138 495.7 292 81.8
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.1e-138 495.0 299 81.6
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.1e-138 495.0 292 80.8
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 9.2e-138 493.8 292 80.8
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.0e-137 492.7 298 80.5
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.0e-137 492.7 298 81.2
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.5e-137 491.9 298 81.5
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.3e-136 490.0 293 81.6
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 2.3e-136 489.2 292 79.8
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 79.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 8.6e-136 487.3 292 80.5
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 7.3e-135 484.2 297 79.5
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 78.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.6e-134 483.0 309 78.6
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 80.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.1e-134 482.6 298 78.9
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 3.6e-134 481.9 291 80.1
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 77.2
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 78.9
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 8.1e-134 480.7 297 77.8
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.3e-133 479.2 301 77.7
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 4.0e-133 478.4 293 80.9
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 5.2e-133 478.0 295 78.6
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 6.8e-133 477.6 299 78.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 1.5e-132 476.5 293 79.2
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.5e-132 476.5 298 78.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.5e-132 476.5 298 78.5
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 2.0e-132 476.1 297 78.5
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 78.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.5e-132 474.2 299 77.9
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 7.5e-132 474.2 299 78.3
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.3e-131 473.4 298 78.2
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.7e-131 473.0 292 79.1
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.7e-131 473.0 299 78.3
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.2e-131 472.6 298 77.9
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 4.9e-131 471.5 291 78.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 4.9e-131 471.5 331 71.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 6.4e-131 471.1 299 77.6
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.4e-130 469.9 298 77.5
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.4e-130 469.9 293 76.8
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.4e-130 469.2 327 72.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 5.4e-130 468.0 298 75.8
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 7.1e-130 467.6 295 78.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 9.2e-130 467.2 298 76.8
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.6e-129 466.5 294 76.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.6e-129 466.5 296 79.1
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.1e-129 466.1 290 77.2
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 2.1e-129 466.1 292 78.1
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 4.6e-129 464.9 298 75.8
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 5.1e-128 461.5 297 77.1
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 2.5e-127 459.1 294 75.9
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 4.3e-127 458.4 291 74.9
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 7.3e-127 457.6 298 73.8
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 9.5e-127 457.2 329 70.2
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 6.2e-126 454.5 278 80.2
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.1e-125 453.8 298 75.8
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 5.2e-125 451.4 291 73.9
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 5.2e-125 451.4 291 73.9
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 5.2e-125 451.4 291 73.9
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 5.2e-125 451.4 291 73.9
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 8.9e-125 450.7 298 72.5
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 73.5
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 8.9e-125 450.7 298 75.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.5e-124 449.9 298 71.1
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 2.0e-124 449.5 298 71.8
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.4e-124 448.7 311 73.0
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 4.4e-124 448.4 294 73.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.2e-123 446.0 282 76.2
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 6.4e-123 444.5 298 74.5
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 8.4e-123 444.1 298 70.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.4e-122 443.4 298 75.8
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.1e-122 441.8 268 82.8
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 2.5e-119 432.6 249 83.9
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 7.3e-119 431.0 239 85.8
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 9.9e-116 420.6 287 71.4
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.3e-115 420.2 270 79.3
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.7e-115 419.9 272 75.7
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.7e-112 409.8 267 73.8
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 5.1e-112 408.3 237 81.4
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 6.6e-112 407.9 296 68.2
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.4e-109 400.2 291 67.4
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 7.6e-108 394.4 231 80.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.6e-105 386.7 247 77.3
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.3e-104 383.6 282 76.2
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 3.6e-102 375.6 222 79.7
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 1.9e-98 363.2 238 74.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 6.5e-91 338.2 295 56.3
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.1e-90 337.4 295 56.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-89 333.2 411 48.4
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 5.1e-88 328.6 287 56.4
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 3.9e-80 302.4 208 70.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.9e-66 256.9 272 51.8
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 7.7e-60 235.0 153 77.1
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 4.2e-58 229.2 258 55.0
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 1.2e-57 227.6 293 40.6
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.1e-53 213.0 217 49.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 4.5e-52 209.1 124 82.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 4.2e-50 202.6 117 76.9
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.2e-47 194.5 190 55.3
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.0e-43 181.4 219 49.3
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.6e-39 166.8 178 53.4
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 9.2e-37 158.3 234 39.7
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 2.7e-36 156.8 111 69.4
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 6.6e-27 125.6 73 78.1
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.6e-25 120.9 82 74.4
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.0e-19 101.7 52 90.4
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.4e-16 91.3 60 75.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 1.5e-15 87.8 52 73.1
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 7.5e-15 85.5 48 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 8.3e-14 82.0 197 32.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.4e-13 80.5 47 76.6
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 2.4e-13 80.5 125 38.4
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.2e-12 78.2 59 61.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.1e-09 67.4 51 62.7
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 6.2e-09 65.9 64 56.2
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.1e-08 65.1 181 30.4
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 1.4e-08 64.7 168 30.4
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 2.3e-08 63.9 182 30.2
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 4.0e-08 63.2 93 45.2
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 2.9e-06 57.0 82 46.3
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 4.9e-06 56.2 42 64.3
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 6.4e-06 55.8 46 54.3
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.4e-06 55.5 52 57.7


User provided reference genes

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