Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 3633.2 1836 100.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2152.1 1859 61.9
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2053.1 1850 58.3
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 2039.2 1868 58.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2021.9 1846 58.3
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1996.5 1847 57.7
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1986.8 1848 57.1
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1983.8 1841 57.2
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1979.5 2055 53.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1973.4 1936 56.6
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1958.3 1843 56.5
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1957.6 1850 57.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1942.5 1844 56.9
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1934.5 1868 55.8
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1920.6 1856 55.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1916.0 1859 54.8
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1912.1 1845 55.2
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1911.0 1853 55.6
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1908.3 1849 55.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1906.0 1833 55.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1903.3 1838 55.8
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1883.2 1901 53.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1880.1 1675 59.5
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1859.0 1851 53.9
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1848.6 1857 53.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1835.1 1847 53.9
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1833.5 1841 53.7
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1832.8 1851 53.5
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1830.1 1853 53.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1821.6 1842 53.1
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1817.0 1757 54.8
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1813.9 1850 53.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1807.0 1857 53.7
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1806.2 1842 54.0
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1803.9 1818 54.1
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1801.6 1854 53.3
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1797.7 1857 53.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1797.3 1737 56.5
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1794.6 1840 53.2
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1787.7 1857 51.9
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1786.9 1845 53.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1785.4 1848 52.8
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1783.5 1841 52.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1763.4 1851 52.4
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1749.9 1853 52.0
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1746.1 1846 52.1
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1745.3 1851 52.0
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1744.9 1860 51.7
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1743.0 1857 51.4
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1741.5 1850 51.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1740.3 1846 51.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1738.0 1857 52.0
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1737.6 1846 52.4
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1733.8 1548 59.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1733.8 1853 52.1
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1726.8 1872 51.1
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1724.9 1856 52.3
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1724.1 1850 51.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1723.8 1852 52.4
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1714.9 1845 51.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1714.5 1846 51.4
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1710.3 1846 51.5
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1700.6 1893 50.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1674.8 1860 50.2
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1672.1 1519 59.8
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1655.6 1863 49.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1630.9 1601 54.5
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1630.2 1852 49.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1618.6 1533 57.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1582.0 1768 49.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1522.7 1663 52.1
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1505.0 1870 46.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1502.3 1883 46.3
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1333.2 1440 51.0
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1333.2 1180 59.5
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1287.7 1421 49.9
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1253.4 1502 48.1
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1216.1 1406 47.5
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1125.2 1064 56.9
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1110.9 1007 59.1
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1107.0 1365 48.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1078.5 1752 38.9
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.5e-304 1049.3 1919 34.8
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 8.9e-292 1008.1 952 55.4
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.1e-289 998.4 1022 54.5
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.1e-276 958.0 1485 41.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.9e-271 939.5 794 62.5
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.0e-258 898.3 806 61.7
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.5e-225 788.1 928 48.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 2.0e-203 714.5 749 54.7
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 3.2e-188 664.1 515 67.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 2.1e-163 581.6 1508 29.4
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 1.1e-140 506.1 408 63.0
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.0e-138 499.6 407 63.1
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 4.5e-134 484.2 607 46.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 7.2e-132 476.9 582 44.0
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-129 468.8 477 56.0
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-127 463.0 411 61.6
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 5.3e-127 460.7 441 58.5
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.8e-120 438.3 601 42.4
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-119 436.4 398 57.5
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 1.7e-112 412.5 310 68.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.4e-111 408.7 589 40.2
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.2e-110 406.4 336 63.1
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 8.8e-106 390.2 555 39.6
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.7e-102 377.1 477 45.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.9e-94 350.9 285 63.5
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 1.3e-93 349.7 366 52.2
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.7e-85 322.8 485 41.6
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 5.0e-85 321.2 309 58.3
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.6e-78 299.7 513 34.7
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 3.1e-74 285.4 258 57.0
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 6.8e-74 284.3 347 47.0
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 6.8e-74 284.3 372 44.9
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 2.0e-73 282.7 179 78.2
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.2e-72 279.3 486 36.8
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.1e-70 272.7 213 63.8
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.7e-70 272.3 178 74.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.5e-70 271.9 916 27.3
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 4.6e-70 271.6 388 41.2
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 3.8e-56 225.3 607 29.8
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 8.4e-56 224.2 891 25.3
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.4e-55 223.4 178 59.6
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.4e-55 223.4 137 76.6
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 4.6e-54 218.4 794 26.3
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 9.0e-50 204.1 401 35.2
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 4.9e-48 198.4 142 68.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.4e-47 196.1 1004 24.0
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 7.1e-47 194.5 435 32.9
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 2.3e-45 189.5 106 83.0
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.3e-44 185.7 112 82.1
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.4e-42 180.3 297 39.1
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.9e-40 172.6 186 52.7
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.6e-38 166.8 207 44.0
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 8.1e-35 154.5 185 48.6
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.0e-32 147.5 154 55.2
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.5e-31 141.7 151 44.4
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.5e-30 139.0 130 58.5
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 1.0e-29 137.5 141 50.4
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-28 133.3 136 52.9
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.5e-28 132.9 179 45.8
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 3.1e-26 125.9 90 70.0
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 6.9e-26 124.8 90 67.8
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.2e-24 119.8 85 67.1
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.9e-23 116.7 82 68.3
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.2e-23 115.9 82 68.3
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 9.7e-20 104.4 53 92.5
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.2e-19 103.2 74 66.2
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.2e-19 103.2 82 62.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.7e-19 102.4 165 38.2
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-15 90.1 197 36.0
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 2.7e-14 86.3 63 65.1
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 3.6e-14 85.9 197 35.5
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.6e-14 85.5 172 32.6
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 3.9e-13 82.4 137 36.5
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 9.7e-12 77.8 83 53.0
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 9.7e-12 77.8 102 44.1
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-11 77.4 64 62.5
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 1.7e-11 77.0 50 74.0
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.7e-11 77.0 50 74.0
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 2.8e-11 76.3 103 42.7
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 2.8e-11 76.3 103 42.7
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 3.7e-11 75.9 63 58.7
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 4.8e-11 75.5 49 73.5
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 4.8e-11 75.5 183 30.1
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.3e-11 75.1 132 39.4
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 2.4e-10 73.2 49 71.4
TAR369G0820 Trochodendron aralioides HOM05D049058 ORTHO05D005167 5.3e-10 72.0 104 44.2
TAR369G0648 Trochodendron aralioides HOM05D049058 ORTHO05D005167 4.5e-09 68.9 81 50.6
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 1.7e-08 67.0 180 27.8
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 7.2e-07 61.6 152 29.6
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 1.2e-06 60.8 155 27.1
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 1.2e-06 60.8 155 27.1
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.6e-06 60.5 63 46.0
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 2.1e-06 60.1 163 29.4
TAR374G0942 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.1e-06 60.1 47 66.0


User provided reference genes

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