Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.1e-224 782.7 535 100.0
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.2e-54 218.8 187 65.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.6e-51 208.4 206 59.7
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.6e-51 207.2 198 62.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.6e-51 206.8 205 59.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.9e-51 206.1 253 51.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.0e-50 205.7 215 57.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.8e-50 204.9 235 53.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.3e-50 204.5 233 52.8
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.3e-50 204.5 203 60.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.1e-49 202.2 204 58.3
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.5e-49 201.1 204 57.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.3e-49 200.3 184 64.7
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.3e-49 200.3 167 68.3
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 5.7e-49 199.9 304 47.7
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 9.7e-49 199.1 210 60.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.7e-49 199.1 169 64.5
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.3e-48 198.7 211 55.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.7e-48 198.4 233 55.8
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.1e-47 195.7 249 50.2
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.1e-47 195.7 321 43.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.1e-47 195.7 208 58.7
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.1e-47 194.1 188 61.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 5.3e-47 193.4 253 52.2
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 5.3e-47 193.4 257 51.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 9.1e-47 192.6 216 53.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-46 191.8 211 54.0
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.0e-46 191.4 221 51.6
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.0e-46 191.4 204 56.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.4e-46 190.7 364 42.6
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 4.5e-46 190.3 211 53.6
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.5e-46 190.3 211 53.6
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.5e-46 190.3 205 55.1
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.9e-46 189.9 203 54.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.9e-46 189.9 211 53.6
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.7e-46 189.5 169 66.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 7.7e-46 189.5 157 68.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-46 189.5 173 61.8
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-46 189.5 173 61.8
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.0e-45 189.1 235 53.2
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.2e-45 188.0 311 46.9
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.2e-45 188.0 208 55.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 6.5e-45 186.4 260 48.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 8.5e-45 186.0 256 50.4
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.1e-44 185.7 151 67.5
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.1e-44 185.7 151 67.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 254 48.8
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 204 52.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 219 53.0
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.4e-44 185.3 270 47.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.5e-44 184.5 240 50.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.5e-44 184.5 218 53.2
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 7.2e-44 183.0 231 51.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 9.4e-44 182.6 146 67.1
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.2e-43 182.2 238 50.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-43 181.8 146 67.1
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.1e-43 181.4 210 53.3
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.1e-43 181.4 172 61.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.7e-43 181.0 205 54.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 3.6e-43 180.6 210 56.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 7.9e-43 179.5 210 54.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 7.9e-43 179.5 206 55.8
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.0e-42 179.1 170 62.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.4e-42 178.7 225 52.4
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.3e-42 177.9 364 42.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.3e-42 177.9 170 61.8
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.3e-42 177.9 170 61.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.9e-42 177.2 144 68.1
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.9e-42 177.2 247 49.8
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 5.1e-42 176.8 240 52.1
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 5.1e-42 176.8 174 62.6
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 6.7e-42 176.4 217 51.2
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 6.7e-42 176.4 207 52.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.7e-42 176.4 219 50.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.8e-42 176.0 219 50.7
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 8.8e-42 176.0 302 42.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.1e-41 175.6 208 52.4
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-41 175.6 213 52.1
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-41 175.6 147 67.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 4.4e-41 173.7 155 61.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.7e-41 173.3 174 59.8
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.7e-41 173.3 148 64.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 7.4e-41 172.9 198 54.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 9.7e-41 172.6 303 43.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.2e-40 171.4 414 40.6
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.8e-40 171.0 255 46.7
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.7e-40 170.6 303 45.9
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 8.2e-40 169.5 215 50.2
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.4e-39 167.9 166 58.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.6e-38 165.2 188 55.9
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-38 165.2 145 64.8
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.7e-38 162.9 120 72.5
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.3e-37 162.2 183 54.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 8.5e-37 159.5 132 64.4
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.1e-36 159.1 172 54.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.5e-36 158.7 118 67.8
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.5e-36 158.7 119 69.7
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.5e-36 156.8 133 66.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.5e-36 156.8 109 73.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.6e-35 155.2 297 39.7
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-35 155.2 101 76.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 6.1e-35 153.3 101 75.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-34 152.1 100 75.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.3e-34 151.4 171 51.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.3e-34 151.4 171 52.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.3e-34 151.4 105 75.2
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.0e-34 151.0 152 55.3
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 4.0e-34 150.6 106 73.6
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.2e-34 150.2 171 52.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 7.5e-33 146.4 161 55.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.4e-31 142.1 204 51.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.4e-31 142.1 201 52.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-30 137.9 146 56.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.0e-29 136.0 280 37.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.3e-29 135.6 143 57.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.9e-29 134.4 171 44.4
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.5e-28 132.1 210 46.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 4.2e-28 130.6 92 75.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 7.2e-28 129.8 170 52.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-27 129.0 88 72.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.6e-27 128.6 149 51.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.6e-27 128.6 149 51.0
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 8.0e-27 126.3 80 76.2
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.4e-26 125.6 198 42.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.0e-26 124.4 90 66.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.7e-25 120.2 121 57.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.2e-24 118.2 111 55.9
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.8e-24 117.9 121 55.4
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.4e-23 115.5 106 57.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.1e-23 114.4 176 46.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.1e-23 114.0 116 57.8
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.6e-22 112.1 116 56.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-22 111.7 142 48.6
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.5 106 57.5
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.5 106 55.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.7e-21 108.6 105 55.2
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 6.5e-21 106.7 105 56.2
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.5e-20 105.5 102 56.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.2e-20 104.0 105 54.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.2e-20 103.2 120 52.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 7.2e-20 103.2 107 55.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.2e-19 102.4 172 41.9
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 8.0e-19 99.8 100 58.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.3e-18 98.2 138 48.6
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.3e-18 98.2 147 45.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.3e-18 98.2 209 35.9
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.0e-18 97.4 102 49.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.8e-18 96.7 100 57.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 9.8e-17 92.8 105 44.8
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.2e-14 85.9 113 43.4
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.9e-13 81.3 66 71.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 8.6e-13 79.7 109 47.7
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.1e-12 79.3 67 58.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.9e-12 78.6 112 39.3
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 4.3e-12 77.4 51 68.6
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 5.6e-12 77.0 48 81.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-11 75.1 163 39.3
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 3.6e-11 74.3 95 53.7
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.6e-11 74.3 171 35.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 1.8e-10 72.0 226 33.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.6e-09 68.2 145 32.4
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 2.4e-07 61.6 64 48.4
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.0e-07 60.1 67 52.2


User provided reference genes

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