Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 0.0e+00 1333.2 957 100.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.0e-262 910.6 973 76.5
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.7e-246 856.7 954 74.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.3e-246 856.3 941 67.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.5e-242 841.3 921 74.2
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 3.1e-235 819.3 956 72.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.7e-231 806.2 987 66.3
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.5e-231 805.8 971 68.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 7.8e-231 804.7 956 69.8
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.3e-230 803.1 918 69.4
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 9.9e-226 787.7 982 69.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 7.1e-224 781.6 986 64.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 3.6e-220 769.2 983 69.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.8e-220 768.8 908 66.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.2e-220 768.5 983 69.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.1e-219 767.7 918 70.6
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.4e-219 767.3 912 68.6
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 6.9e-219 765.0 914 71.9
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.0e-218 763.5 899 72.1
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.4e-218 762.7 961 67.8
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.6e-218 761.5 900 72.8
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.9e-218 761.1 973 60.2
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 8.4e-217 758.1 914 67.6
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-216 757.7 944 62.2
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 5.4e-216 755.4 928 71.1
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.9e-214 749.2 962 69.3
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.6e-213 744.6 987 69.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.3e-212 744.2 902 72.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.4e-211 740.7 915 70.5
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.8e-211 740.3 911 73.3
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 5.3e-211 738.8 955 62.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.0e-211 738.0 817 76.3
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 9.0e-211 738.0 908 67.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 9.0e-211 738.0 862 70.0
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.0e-211 738.0 926 67.8
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.2e-210 737.6 957 66.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.2e-210 737.6 902 73.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.5e-210 737.3 941 67.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.4e-210 736.1 900 71.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.8e-210 735.3 919 69.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 7.6e-210 734.9 922 65.1
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.1e-208 731.1 912 65.6
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.1e-208 731.1 922 66.8
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.4e-208 729.9 914 69.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.2e-208 729.6 902 63.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 5.5e-208 728.8 900 73.1
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.5e-208 728.8 898 70.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.3e-208 728.0 898 70.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.1e-207 726.9 979 64.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.7e-207 726.5 892 68.8
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 6.0e-207 725.3 897 65.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.0e-206 724.5 910 70.1
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.0e-206 724.5 905 70.6
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.8e-206 723.8 890 69.2
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 6.7e-206 721.8 888 72.6
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.9e-205 720.3 969 64.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 9.6e-205 718.0 923 65.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-204 717.6 905 69.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 4.8e-204 715.7 914 69.4
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 8.1e-204 714.9 910 66.9
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.1e-203 714.5 982 64.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 6.9e-203 711.8 896 65.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.5e-202 710.7 947 66.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.5e-202 710.7 892 70.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 7.6e-202 708.4 892 70.1
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.7e-201 707.2 948 65.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 8.4e-201 704.9 921 67.2
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.4e-200 704.1 986 67.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 3.2e-200 703.0 871 66.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.5e-200 702.2 932 67.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 7.1e-200 701.8 904 67.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.1e-199 700.3 896 66.3
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.3e-198 697.6 919 68.8
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.3e-198 696.8 845 70.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-197 693.7 932 67.2
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.1e-195 688.0 804 75.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.8e-195 687.2 885 65.5
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.4e-195 686.8 856 69.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.3e-195 685.6 888 67.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 6.9e-195 685.3 833 71.8
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-194 684.5 857 72.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 2.2e-193 680.2 854 69.3
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 8.5e-193 678.3 899 64.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.6e-191 672.5 936 65.5
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 6.1e-191 672.2 908 67.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.0e-190 669.8 886 68.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.7e-189 664.8 900 65.3
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.6e-188 664.1 894 60.9
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.8e-188 663.3 772 74.4
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 4.8e-188 662.5 907 67.5
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 4.1e-187 659.4 913 66.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 6.5e-185 652.1 904 64.7
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 9.4e-184 648.3 905 67.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.2e-183 647.9 810 71.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 6.1e-183 645.6 885 66.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.8e-182 644.0 910 67.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 3.0e-182 643.3 904 67.8
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 6.7e-182 642.1 908 65.7
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 8.8e-182 641.7 903 67.4
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-180 637.9 903 66.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.8e-180 636.7 918 65.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 3.7e-180 636.3 908 66.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 6.3e-180 635.6 943 61.3
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 8.2e-180 635.2 920 60.4
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.4e-179 633.6 858 67.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 9.1e-179 631.7 899 66.9
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.4e-178 629.8 906 64.9
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 4.5e-178 629.4 913 62.7
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.8e-177 626.3 918 62.1
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 6.5e-177 625.5 857 64.2
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.4e-176 624.4 893 67.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-176 624.4 885 64.9
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 2.5e-176 623.6 909 65.9
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 9.4e-176 621.7 911 61.6
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.0e-174 618.2 908 65.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-173 614.0 818 67.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 4.4e-173 612.8 838 68.6
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 4.4e-173 612.8 906 54.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.9e-168 597.4 938 61.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.2e-167 594.7 893 64.9
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 6.3e-164 582.4 877 58.5
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 6.3e-164 582.4 817 61.6
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-162 577.8 877 58.0
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-162 577.8 877 58.0
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.5e-160 571.2 838 64.2
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.2e-159 568.2 780 65.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.4e-158 564.7 790 62.2
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.8e-156 557.0 799 61.5
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.0e-153 548.5 842 56.2
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.5e-152 542.7 745 69.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 5.7e-149 532.7 899 55.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.7e-149 532.7 821 63.7
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.9e-148 529.6 685 77.8
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 4.1e-147 526.6 856 60.7
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.5e-144 517.3 820 55.1
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-144 515.8 877 56.0
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-144 515.8 906 54.0
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-143 514.6 906 54.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 7.5e-141 505.8 893 54.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.4e-139 499.6 741 60.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-137 495.4 684 67.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-136 491.9 772 50.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 5.6e-136 489.6 728 62.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.3e-128 463.4 926 50.4
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-125 454.5 891 53.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.1e-123 446.0 869 48.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 7.8e-122 442.6 789 55.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.0e-121 440.7 651 73.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.5e-117 428.3 915 36.6
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.6e-114 418.3 600 62.7
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.6e-113 412.5 851 56.1
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-107 395.2 924 45.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 4.2e-107 393.7 522 65.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.9e-96 358.2 645 69.5
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.5e-93 348.6 931 46.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.3e-89 335.5 732 49.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.3e-88 330.9 322 67.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 7.4e-88 329.7 661 57.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 7.4e-88 329.7 572 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.4e-83 315.5 607 62.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-81 306.6 1289 29.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.2e-74 285.8 494 46.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.4e-69 267.7 263 66.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.7e-63 247.7 318 77.0
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 5.5e-59 233.8 140 80.7
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.8e-55 220.7 286 44.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 9.4e-51 206.5 221 54.3
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.2e-39 168.7 198 48.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 9.2e-30 136.7 88 77.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.5e-27 129.4 120 55.8
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-27 129.4 75 81.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.0e-25 121.7 119 56.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 6.0e-21 107.5 66 81.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.3e-11 75.1 179 33.5
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.2e-10 73.2 56 58.9
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 6.8e-09 67.4 227 70.5
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.2e-06 57.0 64 50.0


User provided reference genes

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