Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 4.5e-147 524.6 273 100.0
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.7e-117 426.4 273 85.0
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-116 423.7 273 84.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.4e-116 422.5 276 82.2
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.0e-114 417.2 279 81.7
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.7e-114 416.4 281 81.1
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.7e-114 416.4 276 81.5
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.9e-114 415.6 272 83.1
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 3.8e-114 415.2 274 81.4
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 8.5e-114 414.1 273 81.0
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.2e-113 412.1 274 79.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 7.2e-113 411.0 278 80.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.7e-112 409.1 276 80.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 6.1e-112 407.9 280 80.0
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.0e-111 407.1 278 79.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.4e-111 406.8 273 81.0
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-111 406.4 279 79.9
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.3e-111 406.0 275 77.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.9e-111 405.2 278 79.5
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.9e-111 405.2 278 79.5
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.1e-111 404.8 275 80.7
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 8.8e-111 404.1 276 81.2
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.0e-110 402.9 278 80.6
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.0e-110 402.9 278 80.2
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.3e-110 402.1 278 80.9
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.3e-110 402.1 277 78.0
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 4.4e-110 401.7 277 79.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 5.7e-110 401.4 280 78.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.4e-110 401.0 279 80.3
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 7.4e-110 401.0 277 78.0
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.7e-109 399.8 247 84.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 6.3e-109 397.9 271 79.0
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 8.2e-109 397.5 275 77.1
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-108 397.1 276 77.9
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 276 78.3
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.4e-108 396.0 273 79.5
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.4e-108 396.0 285 76.5
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 79.9
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 79.9
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.1e-108 395.6 275 77.5
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 78.5
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.1e-108 395.2 276 77.2
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 5.3e-108 394.8 279 79.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.0e-108 394.4 276 77.2
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 7.0e-108 394.4 285 76.5
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.2e-107 393.7 261 81.2
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.2e-107 393.7 276 77.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-107 393.7 280 76.4
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.0e-107 392.9 283 77.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 5.9e-107 391.3 277 78.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 5.9e-107 391.3 285 75.4
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 7.7e-107 391.0 275 76.7
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 7.7e-107 391.0 273 80.2
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-106 389.8 276 77.5
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.7e-106 389.8 277 78.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 8.5e-106 387.5 284 75.4
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.9e-105 386.3 275 77.8
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.9e-105 386.3 275 77.8
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 5.5e-105 384.8 279 78.5
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 7.2e-105 384.4 272 76.8
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 7.2e-105 384.4 277 74.4
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 9.4e-105 384.0 278 76.6
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 9.4e-105 384.0 278 76.6
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 9.4e-105 384.0 278 74.8
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.2e-104 383.6 285 75.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.6e-104 383.3 277 75.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.1e-104 382.9 279 74.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 6.1e-104 381.3 272 76.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 1.0e-103 380.6 276 76.1
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.4e-103 380.2 276 77.2
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.8e-103 379.8 275 76.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.8e-103 379.8 273 75.1
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 3.0e-103 379.0 273 75.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.9e-103 378.6 273 75.5
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 3.9e-103 378.6 281 73.3
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.9e-103 378.6 273 75.1
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.7e-103 377.9 274 74.8
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.5e-102 376.7 277 75.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 7.4e-102 374.4 275 75.6
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.3e-101 373.6 272 75.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.7e-101 373.2 272 76.1
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.7e-101 373.2 273 76.2
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 73.2
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.8e-101 372.5 274 72.3
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 75.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 75.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 75.8
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 75.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.8e-101 371.7 272 75.4
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 75.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 75.4
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.1e-100 370.5 273 75.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 75.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 75.4
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.1e-100 370.5 276 76.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-100 370.2 272 75.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-100 370.2 272 75.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.1e-100 369.0 251 77.7
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 7.0e-100 367.9 272 75.0
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 7.0e-100 367.9 283 72.4
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 7.0e-100 367.9 271 73.1
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.2e-99 367.1 272 75.0
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.5e-99 365.5 218 86.7
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.5e-99 365.2 198 92.9
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 5.9e-99 364.8 279 75.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.7e-99 364.4 270 72.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.3e-98 363.6 214 86.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.2e-98 362.8 277 74.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.9e-98 362.5 274 74.8
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.9e-98 362.5 273 73.3
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.5e-97 360.1 286 71.0
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.9e-97 359.8 276 73.6
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 3.2e-97 359.0 277 74.4
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.1e-96 354.8 277 72.2
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.4e-95 353.6 279 71.3
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 4.4e-94 348.6 229 79.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 3.7e-93 345.5 194 87.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.5e-86 323.6 221 74.2
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.4e-84 317.0 197 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 5.9e-83 311.6 211 75.4
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.5e-81 307.0 253 66.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.2e-79 298.5 244 70.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.8e-79 298.1 170 88.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.4e-70 268.9 196 78.1
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.2e-67 260.8 194 73.7
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 5.0e-66 255.4 163 81.6
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.8e-64 249.6 200 74.5
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.3e-63 246.5 134 92.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-60 237.7 161 72.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 6.8e-55 218.4 165 64.2
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.6e-51 207.2 274 51.5
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.5e-43 179.5 121 75.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.0e-42 176.4 157 70.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.1e-39 167.9 231 52.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.2e-38 164.5 96 83.3
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 187 47.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 187 47.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.5e-20 103.6 81 72.8
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.8e-18 97.4 112 58.9
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 9.3e-12 75.1 183 31.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.5e-11 73.2 156 35.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.6e-08 64.3 38 81.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.2e-08 62.0 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 3.1e-07 60.1 60 50.0
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 2.0e-06 57.4 99 41.4
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 2.6e-06 57.0 99 41.4


User provided reference genes

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