Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 0.0e+00 1406.0 705 100.0
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.3e-251 873.2 752 60.2
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 3.2e-250 868.6 805 57.9
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 4.7e-241 838.2 776 57.6
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.0e-240 835.1 753 59.0
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.1e-237 827.0 752 59.2
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.8e-237 826.2 756 58.6
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 5.9e-236 821.2 752 58.5
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.9e-236 821.2 756 57.8
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 7.8e-236 820.8 756 57.7
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.0e-235 820.5 752 57.3
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 2.3e-235 819.3 752 57.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 6.6e-235 817.8 753 58.0
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.9e-234 816.2 754 57.0
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 2.5e-234 815.8 742 58.8
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.1e-233 812.8 753 57.2
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 4.7e-233 811.6 752 57.2
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 8.0e-233 810.8 752 58.0
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.2e-232 808.1 753 57.5
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.8e-232 807.7 788 56.1
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 8.9e-232 807.4 787 56.0
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.5e-231 806.6 768 55.5
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.5e-231 804.3 790 55.8
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 9.8e-231 803.9 755 57.6
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 4.9e-230 801.6 755 57.2
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 7.0e-229 797.7 751 56.7
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 9.2e-229 797.3 756 55.8
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.6e-228 796.6 754 56.5
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 3.0e-227 792.3 752 55.2
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.0e-227 792.3 753 56.8
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 5.0e-227 791.6 777 55.3
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 8.6e-227 790.8 754 56.2
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 5.6e-226 788.1 755 55.9
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.3e-226 787.7 754 55.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 8.1e-225 784.3 755 55.6
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 5.2e-224 781.6 756 54.9
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 6.8e-224 781.2 835 52.2
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 5.8e-223 778.1 753 55.0
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.3e-222 776.9 739 57.1
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.2e-222 776.2 670 60.1
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.9e-222 775.8 783 54.8
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 3.7e-222 775.4 755 55.0
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.1e-221 773.9 752 55.3
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 4.1e-221 771.9 835 52.1
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 5.4e-221 771.5 684 60.7
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 5.4e-221 771.5 757 55.2
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 6.0e-220 768.1 757 55.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.3e-219 766.1 780 54.2
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 3.9e-219 765.4 755 55.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 5.1e-219 765.0 750 53.7
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 9.5e-218 760.8 755 53.9
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 2.1e-217 759.6 676 58.9
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 8.1e-217 757.7 753 55.5
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.4e-216 756.9 754 54.8
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.4e-216 756.9 752 54.0
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 6.8e-216 754.6 757 54.4
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-215 753.1 747 54.5
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 4.4e-215 751.9 742 55.1
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 9.9e-215 750.7 710 56.8
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.9e-214 749.2 758 54.9
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 6.4e-214 748.0 756 54.1
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.1e-212 743.0 660 58.3
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.0e-211 740.7 758 54.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 5.1e-211 738.4 752 54.0
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.6e-211 738.0 765 52.8
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 3.3e-210 735.7 772 52.1
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 3.3e-210 735.7 660 59.4
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 2.8e-209 732.6 752 53.7
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 3.1e-208 729.2 752 53.9
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.5e-207 726.9 752 53.2
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.6e-207 726.1 753 53.3
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 7.6e-207 724.5 752 52.7
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 7.6e-207 724.5 682 57.3
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 4.9e-206 721.8 771 52.4
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 8.4e-206 721.1 752 53.7
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 4.2e-205 718.8 752 52.9
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 7.1e-205 718.0 752 53.1
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 9.3e-205 717.6 752 52.8
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 7.8e-204 714.5 754 53.3
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 3.0e-203 712.6 739 53.7
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 3.9e-203 712.2 662 56.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.9e-202 709.9 674 56.4
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 3.3e-202 709.1 753 53.0
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.8e-201 706.1 760 52.6
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.6e-201 705.7 757 52.7
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 3.6e-201 705.7 669 56.4
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 3.1e-200 702.6 753 52.1
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 3.1e-200 702.6 753 52.1
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 4.5e-199 698.7 614 60.4
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.3e-198 697.2 792 48.7
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.1e-197 694.1 755 51.9
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.9e-197 693.3 728 52.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 2.7e-196 689.5 752 51.2
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.0e-195 686.0 699 54.4
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.1e-188 663.3 761 49.5
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 2.1e-188 663.3 759 50.7
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.6e-188 662.1 748 49.7
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 4.8e-185 652.1 570 62.3
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 6.9e-184 648.3 758 48.7
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 8.7e-179 631.3 744 48.5
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 2.5e-178 629.8 752 48.7
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 2.4e-176 623.2 607 55.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 8.2e-169 598.2 728 48.9
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 3.4e-167 592.8 924 40.6
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.3e-162 576.2 757 44.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 2.4e-160 570.1 648 50.3
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 5.0e-158 562.4 630 51.0
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 8.8e-155 551.6 675 47.4
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 6.7e-147 525.4 565 51.2
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.1e-144 518.1 739 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 3.5e-143 513.1 803 41.6
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 5.9e-135 485.7 539 51.2
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 3.2e-133 479.9 578 45.8
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 5.4e-128 462.6 600 45.7
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 3.2e-120 436.8 616 42.5
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 7.0e-120 435.6 563 46.7
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 4.3e-101 373.2 411 50.1
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.9e-94 350.1 399 48.9
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.2e-89 334.3 350 53.7
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 1.7e-65 255.0 529 32.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.1e-59 234.2 382 40.1
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.4e-56 225.3 527 32.1
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 2.2e-49 201.4 700 25.1
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.7e-47 194.5 146 65.1
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.6e-45 188.0 233 44.6
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.6e-45 188.0 233 44.6
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 1.1e-43 182.6 195 51.3
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 2.9e-41 174.5 131 68.7
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 5.3e-35 153.7 160 48.8
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.1e-27 129.4 523 26.6
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.6e-23 115.5 102 52.9
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.7e-20 104.4 163 46.0
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 3.1e-19 101.3 60 80.0
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 4.1e-19 100.9 56 85.7
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.7e-18 98.2 56 80.4
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 7.7e-18 96.7 63 73.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 2.3e-17 95.1 56 80.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.9e-16 92.0 66 62.1
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.3e-16 91.3 71 63.4
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.4e-14 85.9 56 76.8
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 3.4e-13 81.3 54 66.7
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.1e-11 74.7 66 54.5
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.2e-11 73.2 66 54.5
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.6e-10 72.4 69 58.0
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 1.4e-06 59.3 60 51.7
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 1.4e-06 59.3 60 51.7


User provided reference genes

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