Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 0.0e+00 1178.3 568 100.0
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 0.0e+00 1149.4 568 97.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1084.7 568 91.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 0.0e+00 1081.2 571 91.1
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1080.1 568 91.0
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 0.0e+00 1077.8 568 90.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 568 90.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 90.0
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 90.1
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 90.5
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 90.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 0.0e+00 1075.8 568 90.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 561 90.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.2e-308 1062.4 568 89.3
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 564 89.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.8e-308 1061.2 568 88.9
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 567 88.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 565 88.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 568 88.2
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 88.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 568 88.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 568 88.7
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 6.8e-307 1056.6 568 88.2
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 568 88.9
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 568 88.9
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.4e-306 1053.9 568 88.4
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 561 89.3
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 563 89.5
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.7e-305 1050.8 563 89.2
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.7e-305 1050.8 557 89.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 568 87.7
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 568 87.1
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.4e-304 1047.0 568 87.7
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 564 89.0
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 563 87.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 561 88.2
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 7.8e-303 1043.1 566 88.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 567 87.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 563 87.7
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 564 88.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 567 87.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 563 87.6
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 563 87.6
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 565 86.4
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 557 89.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 561 87.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 563 88.5
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 568 87.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 568 86.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 561 87.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 556 88.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 563 88.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 567 87.1
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 563 87.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 563 87.9
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 568 85.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 568 86.3
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 568 86.3
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 568 87.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 564 87.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 563 86.5
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 86.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.8e-296 1021.9 563 86.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 569 85.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 565 84.4
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 568 84.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 561 86.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 565 84.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 550 86.7
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 565 83.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 563 86.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 564 86.0
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 6.2e-292 1006.9 568 85.4
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 568 85.0
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 562 85.2
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 568 83.1
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 561 84.3
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.7e-289 997.7 563 84.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 9.2e-288 993.0 549 86.0
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.0e-287 991.9 564 84.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.0e-287 991.9 552 85.0
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.7e-287 991.5 571 83.2
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.6e-287 990.7 549 85.8
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.9e-286 987.6 565 84.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.9e-286 987.6 564 83.7
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.0e-286 987.3 568 83.6
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.5e-285 984.9 564 83.7
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.5
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 83.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 9.5e-285 983.0 550 85.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.2e-284 982.6 551 84.8
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.6e-284 982.2 564 83.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 83.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 83.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 82.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.8e-284 981.5 570 83.0
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.0
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.0
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 83.2
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 8.1e-284 979.9 563 81.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.3e-283 978.4 563 81.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 82.6
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 82.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-282 976.1 567 82.7
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.3e-281 972.6 562 83.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 82.1
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.1e-280 967.6 564 82.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.4e-280 967.2 534 85.6
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 9.2e-280 966.5 564 82.4
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 9.2e-280 966.5 564 82.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.6e-279 965.7 564 81.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.1e-279 965.3 562 83.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.7e-279 964.9 568 80.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.5e-279 964.5 564 82.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-278 963.0 564 82.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.7e-271 938.3 563 81.7
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.7e-271 938.3 563 78.7
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.7e-270 933.3 563 78.9
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 5.6e-269 930.6 568 77.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.3e-265 919.5 565 77.3
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 6.4e-265 917.1 571 76.5
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 2.4e-264 915.2 574 75.3
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.2e-264 914.8 571 75.8
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.2e-263 912.9 570 75.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.9e-262 907.9 568 75.7
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 5.6e-261 904.0 570 76.1
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.6e-260 901.4 564 78.0
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 8.1e-260 900.2 524 82.4
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.5e-258 896.0 565 74.0
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.2e-256 888.3 565 74.3
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 7.1e-256 887.1 562 75.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.0e-250 869.0 557 78.1
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.6e-247 859.4 566 72.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.6e-244 849.4 569 72.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 6.9e-243 844.0 568 72.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.5e-242 841.3 563 70.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.8e-242 840.9 468 83.1
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.9e-225 785.4 424 88.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-216 756.9 563 67.3
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-210 736.5 425 82.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 3.8e-209 731.9 567 65.3
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.4e-189 665.2 373 83.1
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.9e-180 635.2 541 56.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.1e-169 598.6 417 72.4
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-167 592.8 329 82.4
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.4e-165 585.9 292 90.4
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.4e-165 585.9 529 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-164 583.9 488 55.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 8.4e-148 528.1 418 59.3
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.1e-137 492.3 567 49.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.2e-135 485.3 568 49.1
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.6e-130 469.2 305 74.1
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-127 459.9 468 54.5
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 8.3e-87 325.5 549 39.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.5e-85 319.7 213 74.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 2.3e-81 307.4 492 35.8
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-66 257.3 197 64.5
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.1e-65 253.8 197 63.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.6e-61 240.0 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.0e-52 210.7 121 82.6
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.3e-49 201.1 133 75.2
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.2e-47 194.5 128 75.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 7.1e-46 189.5 128 69.5
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-42 178.3 166 59.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-42 176.4 166 59.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-41 175.6 166 59.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-40 172.2 166 58.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.7e-36 158.3 317 30.9
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.5e-32 145.2 495 26.3
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.2e-30 137.5 87 70.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.0e-29 133.3 94 68.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-28 131.0 213 39.9
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.8e-26 124.4 85 64.7
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-25 121.7 76 69.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.4e-22 110.2 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-19 102.4 166 42.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.1e-17 95.9 103 49.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.5e-11 74.7 46 67.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.9e-06 58.5 72 54.2
Solyc02g070180.3 Solanum lycopersicum HOM05D000128 ORTHO05D000059 2.5e-06 58.2 147 33.3
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 9.3e-06 56.2 99 28.3


User provided reference genes

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