Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 3.6e-261 904.4 477 100.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.8e-90 337.4 451 49.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.8e-90 337.4 494 45.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.7e-90 335.5 451 49.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 9.7e-89 331.6 484 46.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.8e-88 330.1 496 46.6
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.2e-86 324.7 491 46.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.4e-86 323.2 379 52.8
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 4.5e-86 322.8 483 47.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.2e-83 314.7 500 44.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.8e-82 310.8 471 44.8
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.8e-82 310.8 492 44.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 3.9e-82 309.7 488 43.4
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 5.1e-82 309.3 431 45.9
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.1e-82 309.3 395 50.9
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 9.7e-81 305.1 466 44.8
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 4.8e-80 302.8 427 45.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.1e-79 301.6 468 45.1
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.4e-79 301.2 492 45.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.8e-79 300.8 476 45.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.9e-77 293.5 452 44.2
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.9e-77 293.5 453 45.9
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.8e-77 293.1 497 42.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 6.5e-77 292.4 502 42.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.4e-76 291.2 475 43.8
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.1e-75 287.3 374 47.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.7e-75 287.0 503 41.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.4e-74 284.6 504 41.1
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.0e-74 283.5 494 42.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 6.7e-74 282.3 486 41.6
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 8.8e-74 282.0 510 40.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 5.7e-73 279.3 486 41.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 9.7e-73 278.5 450 41.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.7e-72 277.7 366 50.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 2.2e-72 277.3 500 41.8
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.2e-72 277.3 409 45.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.7e-72 276.6 480 42.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 4.8e-72 276.2 459 44.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-72 276.2 490 42.9
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-72 276.2 490 42.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.3e-72 275.8 484 41.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.8e-71 274.2 503 41.6
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 4.1e-71 273.1 458 44.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 7.0e-71 272.3 510 41.6
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 7.0e-71 272.3 438 43.2
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 9.1e-71 271.9 476 41.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.2e-70 271.6 480 41.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.2e-70 271.6 480 40.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.6e-70 270.4 348 51.1
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.0e-69 268.5 486 42.6
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.5e-69 265.4 388 45.4
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.5e-68 264.6 481 38.7
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 6.1e-67 259.2 476 40.1
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.0e-67 258.8 308 49.7
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.0e-66 258.5 494 39.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.8e-66 257.7 458 41.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.3e-66 257.3 475 41.3
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.0e-66 256.5 436 43.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 6.7e-66 255.8 349 48.4
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.2e-65 255.0 417 43.4
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.0e-65 254.2 443 42.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.6e-65 253.8 377 47.2
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 5.7e-65 252.7 317 51.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.3e-64 251.5 435 42.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.7e-64 251.1 374 49.2
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.7e-64 251.1 478 41.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 6.3e-64 249.2 429 41.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.7e-62 243.8 500 39.0
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.0e-61 241.9 412 42.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 6.5e-61 239.2 422 43.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.1e-60 238.4 348 46.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.2e-60 236.9 428 43.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.1e-59 234.2 446 39.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.7e-59 233.8 420 42.4
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.6e-59 233.4 410 43.4
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.0e-58 229.9 421 42.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.0e-58 229.9 432 40.7
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.0e-57 227.6 522 36.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.6e-57 227.3 444 39.0
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 3.7e-56 223.4 340 42.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.9e-54 216.1 445 38.2
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.3e-53 214.2 446 38.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.9e-53 213.8 346 43.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 7.2e-52 209.1 441 38.1
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.2e-52 209.1 479 37.4
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.2e-52 209.1 285 46.0
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.6e-51 208.0 390 39.5
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.8e-51 207.2 396 39.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 3.4e-49 200.3 348 42.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.2e-48 197.6 412 39.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.7e-48 196.8 491 36.7
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.8e-47 194.5 424 37.3
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.4e-47 194.1 344 41.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 9.2e-47 192.2 403 38.5
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.0e-46 191.0 377 38.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 4.5e-46 189.9 411 38.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.5e-46 189.9 482 36.9
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.8e-45 186.8 350 40.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 7.3e-44 182.6 333 39.0
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.1e-43 181.0 333 38.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.7e-43 179.9 305 43.0
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 6.1e-43 179.5 344 40.7
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 6.8e-42 176.0 429 35.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.5e-41 174.9 337 38.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.4e-41 173.7 358 39.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.0e-38 164.5 341 37.8
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 4.3e-36 156.8 313 38.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 3.6e-35 153.7 365 37.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.4e-34 151.8 331 35.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.6e-33 147.5 430 31.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.6e-33 147.5 430 31.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 3.7e-32 143.7 296 39.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-31 141.7 274 38.7
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-31 139.8 191 47.1
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.2e-31 139.0 330 37.9
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.6e-30 138.3 150 54.7
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 7.8e-30 136.0 215 42.8
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-29 133.7 250 42.0
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 5.6e-28 129.8 324 36.1
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.6e-27 127.1 124 52.4
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.1e-26 124.0 141 52.5
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.0e-26 123.6 229 40.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.4e-23 114.4 199 41.7
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.1e-23 113.6 167 43.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-23 113.2 323 33.1
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 5.6e-20 103.2 467 30.0
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-19 102.1 158 41.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.8e-19 100.9 134 45.5
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.4e-18 98.6 252 35.3
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.4e-15 87.8 492 26.0
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.0e-13 82.4 203 37.9
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.0e-13 80.9 179 39.7
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.2e-11 75.5 92 46.7
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 8.1e-11 72.8 93 50.5
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.2e-10 70.1 94 44.7
DCAR_023757 Daucus carota HOM05D000794 ORTHO05D000616 6.9e-10 69.7 73 50.7
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.9e-10 69.7 92 44.6
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 9.0e-10 69.3 92 44.6
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.6e-09 66.2 97 44.3
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 4.2e-07 60.5 95 38.9
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 4.2e-07 60.5 97 40.2


User provided reference genes

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