Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.4e-98 362.8 172 100.0
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 1.1e-69 266.9 166 74.1
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.2e-67 259.2 165 75.2
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 1.3e-59 233.4 166 66.3
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 4.9e-35 151.8 160 45.0
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 2.5e-34 149.4 153 44.4
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 2.1e-33 146.4 172 45.3
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.0e-32 144.1 148 41.9
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 3.9e-32 142.1 164 42.1
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.5e-31 140.2 148 45.3
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 1.5e-31 140.2 148 45.3
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 4.3e-31 138.7 150 46.0
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 7.4e-31 137.9 158 45.6
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 7.4e-31 137.9 156 44.2
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 9.7e-31 137.5 154 46.1
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 9.7e-31 137.5 149 44.3
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 1.6e-30 136.7 167 41.3
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 2.2e-30 136.3 143 42.0
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 2.8e-30 136.0 146 44.5
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 3.7e-30 135.6 157 45.9
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 3.7e-30 135.6 156 42.3
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 3.7e-30 135.6 145 44.1
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 6.3e-30 134.8 183 38.8
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 6.3e-30 134.8 156 44.9
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 8.2e-30 134.4 150 46.0
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 8.2e-30 134.4 150 46.0
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 8.2e-30 134.4 158 45.6
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 1.1e-29 134.0 153 42.5
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 1.8e-29 133.3 157 44.6
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 1.8e-29 133.3 157 44.6
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 1.8e-29 133.3 157 44.6
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 1.8e-29 133.3 151 46.4
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 3.1e-29 132.5 150 46.0
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 3.1e-29 132.5 181 41.4
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 4.1e-29 132.1 156 46.2
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 4.1e-29 132.1 166 41.6
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 6.9e-29 131.3 152 40.8
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 9.0e-29 131.0 166 41.6
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 1.2e-28 130.6 181 42.5
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.2e-28 130.6 154 40.9
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 1.5e-28 130.2 158 43.7
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 2.0e-28 129.8 154 45.5
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 2.0e-28 129.8 154 45.5
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.0e-28 129.8 154 41.6
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 2.6e-28 129.4 157 43.3
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 2.6e-28 129.4 157 43.3
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.6e-28 129.4 157 41.4
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.6e-28 129.4 158 43.0
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 2.6e-28 129.4 158 43.7
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 3.4e-28 129.0 154 43.5
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 3.4e-28 129.0 182 41.2
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 3.4e-28 129.0 155 40.0
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 4.5e-28 128.6 152 45.4
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 5.9e-28 128.3 146 41.8
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 5.9e-28 128.3 152 42.8
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 7.6e-28 127.9 158 44.3
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 7.6e-28 127.9 151 41.1
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 1.0e-27 127.5 145 40.7
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.3e-27 127.1 156 39.1
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 1.3e-27 127.1 143 44.1
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 1.3e-27 127.1 147 40.8
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.3e-27 127.1 146 42.5
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 1.3e-27 127.1 174 35.1
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.7e-27 126.7 148 40.5
SalBow8G2459 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.7e-27 126.7 161 39.8
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.2e-27 126.3 159 40.9
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 2.2e-27 126.3 173 38.2
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 2.9e-27 125.9 130 49.2
Cc09_g06260 Coffea canephora HOM05D003794 ORTHO05D004464 2.9e-27 125.9 171 39.2
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.8e-27 125.6 146 41.8
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.0e-27 125.2 163 35.0
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 6.5e-27 124.8 165 35.2
SalBow8G4157 Salvia bowleyana HOM05D003794 ORTHO05D004464 6.5e-27 124.8 161 39.1
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 8.5e-27 124.4 158 43.7
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 8.5e-27 124.4 147 42.9
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 8.5e-27 124.4 157 40.8
SalBow8G0239 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.1e-26 124.0 150 40.0
SalBow8G3375 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.1e-26 124.0 150 40.0
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 1.1e-26 124.0 156 39.1
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 1.4e-26 123.6 164 40.2
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.4e-26 123.6 164 36.6
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 1.4e-26 123.6 154 41.6
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.9e-26 123.2 164 35.4
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 1.9e-26 123.2 155 45.2
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 2.5e-26 122.9 154 42.2
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 3.2e-26 122.5 164 41.5
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 3.2e-26 122.5 169 39.6
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 3.2e-26 122.5 153 38.6
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 4.2e-26 122.1 161 40.4
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.2e-26 122.1 154 39.0
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 5.5e-26 121.7 149 42.3
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 9.3e-26 120.9 159 41.5
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 9.3e-26 120.9 154 38.3
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 1.2e-25 120.6 158 40.5
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 2.7e-25 119.4 157 39.5
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 3.6e-25 119.0 181 35.4
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 3.6e-25 119.0 160 38.8
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 3.6e-25 119.0 150 40.0
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 4.6e-25 118.6 145 44.8
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 7.9e-25 117.9 183 34.4
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 7.9e-25 117.9 184 33.7
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 7.9e-25 117.9 148 41.2
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 1.8e-24 116.7 146 43.2
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 2.3e-24 116.3 165 40.0
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 3.9e-24 115.5 147 41.5
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 3.9e-24 115.5 151 40.4
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 6.7e-24 114.8 130 46.9
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 2.5e-23 112.8 149 40.3
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 3.3e-23 112.5 172 37.2
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.3e-23 112.1 149 37.6
Actinidia37906 Actinidia chinensis HOM05D003794 ORTHO05D004464 5.7e-23 111.7 148 38.5
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 7.4e-23 111.3 174 39.1
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 2.2e-22 109.8 146 39.7
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 3.7e-22 109.0 149 38.9
CAN.G519.2 Capsicum annuum HOM05D003794 ORTHO05D004464 4.8e-22 108.6 146 39.7
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 6.3e-22 108.2 146 40.4
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 8.2e-22 107.8 147 38.8
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 1.1e-21 107.5 156 38.5
CAN.G519.1 Capsicum annuum HOM05D003794 ORTHO05D004464 1.8e-21 106.7 151 39.1
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 2.4e-21 106.3 145 37.2
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 3.1e-21 105.9 144 38.9
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 4.1e-21 105.5 153 41.2
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 6.9e-21 104.8 167 37.1
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 9.1e-21 104.4 151 36.4
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 9.1e-21 104.4 119 43.7
CAN.G39.22 Capsicum annuum HOM05D003794 ORTHO05D004464 2.0e-20 103.2 142 37.3
Dinv05549 Davidia involucrata HOM05D003794 ORTHO05D004464 2.0e-20 103.2 164 39.0
Nitab4.5_0000767g0010 Nicotiana tabacum HOM05D003794 ORTHO05D004464 2.0e-20 103.2 151 37.1
Phvul.009G205600 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 2.6e-20 102.8 156 36.5
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 5.9e-20 101.7 151 38.4
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 7.7e-20 101.3 147 38.8
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.0e-19 100.9 164 35.4
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 1.3e-19 100.5 153 35.9
Nitab4.5_0006444g0020 Nicotiana tabacum HOM05D003794 ORTHO05D004464 1.3e-19 100.5 153 36.6
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 1.3e-19 100.5 142 43.0
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.7e-19 100.1 183 33.3
Actinidia33654 Actinidia chinensis HOM05D003794 ORTHO05D004464 2.2e-19 99.8 149 36.2
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 2.9e-19 99.4 108 42.6
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 5.0e-19 98.6 107 43.0
Sopen02g010020 Solanum pennellii HOM05D003794 ORTHO05D004464 6.5e-19 98.2 151 33.8
PGSC0003DMG400010357 Solanum tuberosum HOM05D003794 ORTHO05D004464 6.5e-19 98.2 148 36.5
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 8.5e-19 97.8 151 35.1
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 3.2e-18 95.9 116 38.8
Manes.16G059700 Manihot esculenta HOM05D003794 ORTHO05D004464 4.2e-18 95.5 145 36.6
Solyc02g069065.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 5.5e-18 95.1 148 34.5
Sopen02g018150 Solanum pennellii HOM05D003794 ORTHO05D004464 7.2e-18 94.7 149 36.9
Hma1.2p1_0502F.1_g167680 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 1.2e-17 94.0 120 39.2
Hma1.2p1_2069F.1_g313120 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 2.7e-17 92.8 120 37.5
Solyc02g069057.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 2.7e-17 92.8 147 32.7
Solyc02g069055.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.0e-16 90.9 140 34.3
Sopen02g018160 Solanum pennellii HOM05D003794 ORTHO05D004464 1.0e-16 90.9 141 36.2
Solyc02g069053.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 3.9e-16 89.0 148 33.1
Dinv13778 Davidia involucrata HOM05D003794 ORTHO05D004464 5.7e-15 85.1 134 38.8
SalBow7G3321 Salvia bowleyana HOM05D003794 ORTHO05D004464 5.7e-15 85.1 85 42.4
HPP92_005937 Vanilla planifolia HOM05D003794 ORTHO05D004464 2.2e-14 83.2 162 33.3
MBI18_g20612_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 8.2e-14 81.3 156 35.9
ATR0763G193 Amborella trichopoda HOM05D003794 ORTHO05D004464 4.1e-13 79.0 171 29.2
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 6.9e-13 78.2 104 40.4
MBI15_g34447_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D000638 1.5e-12 77.0 129 35.7
ATR0763G032 Amborella trichopoda HOM05D003794 ORTHO05D004464 5.9e-12 75.1 148 33.8
Potri.015G119100 Populus trichocarpa HOM05D003794 ORTHO05D004464 5.9e-12 75.1 120 35.8
Solyc02g069060.4 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.0e-11 74.3 131 35.1
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 5.0e-11 72.0 128 32.8
Nitab4.5_0003773g0100 Nicotiana tabacum HOM05D003794 ORTHO05D004464 2.5e-10 69.7 90 41.1
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 6.1e-09 65.1 76 43.4
PGSC0003DMG400010359 Solanum tuberosum HOM05D003794 ORTHO05D004464 8.0e-09 64.7 88 36.4
TAR627G0658 Trochodendron aralioides HOM05D003794 ORTHO05D004464 1.8e-08 63.5 152 32.9
Peaxi162Scf00149g00813 Petunia axillaris HOM05D000248 ORTHO05D000146 6.7e-08 61.6 145 29.0
MELO3C027674.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.1e-07 60.8 54 48.1
SMO234G0084 Selaginella moellendorffii HOM05D000950 ORTHO05D000146 1.1e-07 60.8 146 30.1
ATR0763G201 Amborella trichopoda HOM05D003794 ORTHO05D000146 9.7e-07 57.8 164 27.4
MELO3C027491.2 Cucumis melo HOM05D003794 ORTHO05D004464 3.7e-06 55.8 39 61.5


User provided reference genes

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