Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 4.5e-57 224.6 129 100.0
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 4.5e-57 224.6 129 100.0
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 1.2e-54 216.5 129 96.1
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 90.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 5.3e-50 201.1 129 89.1
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 87.6
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 87.6
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 87.6
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 87.6
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.8
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 87.6
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.0
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.2e-48 195.7 129 86.0
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.0
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 85.3
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 8.5e-48 193.7 132 87.1
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 85.3
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 85.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 86.0
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 8.5e-48 193.7 127 86.6
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 85.3
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 84.5
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.5e-47 193.0 130 86.9
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.9e-47 192.6 128 86.7
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 3.2e-47 191.8 127 85.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 85.3
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 7.2e-47 190.7 133 85.0
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.6e-46 189.5 129 83.7
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.6e-46 189.5 130 84.6
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.6e-46 189.5 129 83.7
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.6e-46 189.5 131 85.5
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 2.1e-46 189.1 129 85.3
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 2.7e-46 188.7 127 84.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 3.6e-46 188.3 133 83.5
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 8.0e-46 187.2 128 85.2
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 8.0e-46 187.2 133 82.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 84.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.8e-45 186.0 150 75.3
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.8e-45 186.0 129 81.4
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.3e-45 185.7 130 83.8
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 4.0e-45 184.9 132 84.1
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 82.9
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 5.2e-45 184.5 130 83.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 6.7e-45 184.1 130 84.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 8.8e-45 183.7 132 83.3
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 82.9
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-44 182.2 132 82.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 2.6e-44 182.2 129 82.2
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 2.6e-44 182.2 127 83.5
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 2.6e-44 182.2 132 82.6
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 2.6e-44 182.2 129 83.7
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 4.4e-44 181.4 133 82.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.4e-44 181.4 127 81.1
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-44 181.0 128 82.0
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 5.7e-44 181.0 129 81.4
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 7.5e-44 180.6 116 88.8
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.5e-44 180.6 125 80.8
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 9.7e-44 180.3 127 78.7
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 81.4
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-43 179.9 132 81.1
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.7e-43 179.5 129 82.2
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.7e-43 179.5 132 81.8
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 2.2e-43 179.1 129 78.3
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 2.2e-43 179.1 129 78.3
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.2e-43 179.1 117 87.2
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 6.3e-43 177.6 160 68.8
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 8.2e-43 177.2 128 80.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.2e-43 177.2 129 80.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.1e-42 176.8 127 78.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.4e-42 176.4 116 87.1
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.1e-42 174.9 130 81.5
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 9.1e-42 173.7 121 83.5
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 9.1e-42 173.7 129 80.6
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.0e-41 172.6 119 84.0
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.0e-41 172.6 119 85.7
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 7.7e-41 170.6 116 84.5
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 7.7e-41 170.6 116 84.5
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 1.3e-40 169.9 129 78.3
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.3e-40 169.9 114 86.0
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.3e-40 169.9 121 81.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.3e-40 169.9 116 84.5
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.7e-40 169.5 121 80.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.7e-40 169.5 116 82.8
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.2e-40 169.1 119 81.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.9e-40 168.7 117 85.5
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 5.0e-40 167.9 116 83.6
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.1e-39 166.8 130 79.2
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.9e-39 166.0 129 76.0
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 5.5e-39 164.5 128 76.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 5.5e-39 164.5 125 76.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 2.7e-38 162.2 116 82.8
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 3.6e-38 161.8 133 76.7
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.0e-37 160.2 152 67.1
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.4e-37 159.8 112 82.1
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.4e-37 159.8 129 75.2
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-36 156.8 130 76.2
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-36 156.8 130 76.2
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.5e-36 156.4 125 74.4
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.0e-36 156.0 112 83.0
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 3.4e-36 155.2 132 74.2
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 7.5e-36 154.1 129 76.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.8e-35 152.1 130 74.6
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 3.7e-35 151.8 116 79.3
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.8e-34 149.4 132 73.5
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.1e-34 148.3 132 72.7
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.7e-33 145.6 132 72.0
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 7.7e-33 144.1 127 68.5
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 8.6e-32 140.6 127 68.5
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.5e-31 139.0 119 74.8
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.5e-31 137.1 132 68.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 9.5e-31 137.1 129 69.0
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 3.6e-30 135.2 129 66.7
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 8.0e-30 134.0 110 72.7
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.8e-29 132.9 114 70.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 6.8e-29 131.0 94 80.9
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.5e-28 129.8 94 78.7
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.7e-27 126.3 82 87.8
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.8e-27 125.6 142 59.2
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 4.9e-27 124.8 131 63.4
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 9.2e-26 120.6 80 81.2
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.7e-25 119.0 83 83.1
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 4.5e-25 118.2 134 59.7
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.9e-25 117.9 126 61.1
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.0e-24 117.1 127 62.2
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.9e-24 115.5 68 92.6
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 3.8e-24 115.2 86 77.9
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.5e-23 113.2 66 93.9
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 2.8e-22 109.0 136 57.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.0e-21 105.5 70 84.3
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 2.2e-19 99.4 68 80.9
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.4e-18 95.9 121 52.9
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.7e-16 89.7 123 49.6
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.7e-16 89.7 270 33.3
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 6.6e-16 87.8 58 82.8
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 8.6e-16 87.4 53 92.5
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 5.6e-15 84.7 54 87.0
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.6e-14 83.2 59 79.7
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 4.7e-14 81.6 64 76.6
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 4.0e-13 78.6 87 51.7
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 2.0e-12 76.3 80 65.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.6e-12 75.9 61 70.5
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 7.5e-12 74.3 124 45.2
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 8.6e-08 60.8 40 82.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.5e-07 60.1 48 77.1


User provided reference genes

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