Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 8.5e-90 334.3 272 100.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 8.5e-90 334.3 272 100.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.0e-87 325.5 272 98.9
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.5e-73 279.6 273 89.7
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.3e-65 252.7 268 84.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.0e-64 248.1 267 83.5
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.0e-63 247.7 267 83.5
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 83.5
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 1.8e-63 246.9 269 81.4
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.3e-63 246.5 267 85.0
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.3e-63 246.5 271 81.5
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 4.0e-63 245.7 267 82.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 5.2e-63 245.4 273 82.4
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.2e-62 244.2 267 83.9
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.0e-62 243.4 252 85.7
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.6e-62 243.0 257 86.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.4e-62 242.3 254 85.8
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.4e-62 242.3 265 83.4
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.4e-62 242.3 265 83.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.4e-62 242.3 269 82.5
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.7e-62 241.9 271 81.9
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 7.5e-62 241.5 266 73.3
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 9.8e-62 241.1 265 83.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.3e-61 240.7 265 82.6
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.9e-61 239.6 267 83.1
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 6.4e-61 238.4 267 80.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.4e-61 238.4 267 83.1
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.1e-60 237.7 262 82.4
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.1e-60 237.7 262 82.4
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-60 237.3 267 82.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.4e-60 237.3 248 85.9
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 2.4e-60 236.5 267 82.0
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.2e-60 236.1 263 83.3
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.2e-60 236.1 263 83.3
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.2e-60 236.1 262 82.4
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.1e-60 235.7 268 81.7
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.0e-60 235.0 266 80.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 7.0e-60 235.0 267 79.4
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 7.0e-60 235.0 266 78.9
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.0e-60 235.0 262 82.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 7.0e-60 235.0 267 80.9
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 81.6
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.6e-59 233.8 266 81.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.6e-59 233.8 266 81.2
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.0e-59 233.4 262 81.3
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.7e-59 233.0 267 81.6
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 3.5e-59 232.6 262 82.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 3.5e-59 232.6 271 74.9
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 4.6e-59 232.3 266 80.5
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 5.9e-59 231.9 262 79.0
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 5.9e-59 231.9 266 79.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.8e-59 231.5 267 81.3
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 7.8e-59 231.5 267 78.7
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 7.8e-59 231.5 267 79.4
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.3e-58 230.7 267 81.3
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.7e-58 230.3 271 79.7
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 6.6e-58 228.4 268 79.1
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.6e-58 228.0 267 79.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.6e-58 228.0 267 79.4
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 8.6e-58 228.0 262 82.1
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.5e-57 227.3 273 78.8
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.3e-57 226.1 250 82.8
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.3e-57 225.7 263 81.4
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 4.3e-57 225.7 262 81.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 5.6e-57 225.3 252 78.2
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 9.5e-57 224.6 252 80.6
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.1e-56 223.4 267 78.7
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.8e-56 223.0 267 77.9
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.6e-56 222.6 267 79.4
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 6.2e-56 221.9 268 79.1
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.8e-55 220.3 262 79.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 3.1e-55 219.5 252 81.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 5.2e-55 218.8 268 78.0
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 6.8e-55 218.4 262 77.9
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 6.8e-55 218.4 262 77.9
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 8.9e-55 218.0 253 83.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.9
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.5e-54 217.2 269 77.7
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-54 217.2 267 77.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-54 217.2 267 77.9
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.5e-54 217.2 253 80.2
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 2.0e-54 216.9 252 81.0
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.6e-54 216.5 270 78.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 2.6e-54 216.5 269 77.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.6e-54 216.5 268 77.6
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.6e-54 216.5 267 77.2
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 3.4e-54 216.1 267 77.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 3.4e-54 216.1 250 81.2
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 4.4e-54 215.7 269 77.3
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 4.4e-54 215.7 262 77.9
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 4.4e-54 215.7 262 76.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 4.4e-54 215.7 269 77.3
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.7e-53 213.8 267 77.2
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.9e-53 212.2 269 77.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 6.4e-53 211.8 267 77.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 6.4e-53 211.8 269 77.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 8.3e-53 211.5 269 77.7
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 8.3e-53 211.5 253 79.8
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 8.3e-53 211.5 243 83.5
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.1e-52 211.1 265 77.0
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.4e-52 210.7 267 76.8
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.4e-52 210.7 250 80.8
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-52 210.3 267 76.8
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.4e-52 209.9 269 77.3
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.4e-52 209.9 269 77.3
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.4e-52 209.9 269 77.3
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.4e-52 209.9 269 77.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 3.2e-52 209.5 267 76.4
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.2e-51 207.6 272 74.6
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.6e-51 205.7 254 78.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 4.6e-51 205.7 255 79.2
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.7e-50 203.8 270 76.7
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.0e-50 203.0 282 73.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.9e-50 202.6 269 75.8
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 5.0e-50 202.2 271 49.8
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.5e-49 200.7 257 77.8
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.5e-49 200.7 257 77.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.9e-49 200.3 267 75.3
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-48 197.6 246 80.1
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.6e-48 197.2 259 73.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.6e-48 197.2 266 75.6
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 2.1e-48 196.8 251 77.3
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.1e-48 196.8 230 85.7
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.8e-47 193.7 267 73.4
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 3.1e-47 193.0 253 73.5
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.6e-46 189.9 269 75.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.4e-46 189.1 277 42.2
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.7e-45 186.0 271 73.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 4.1e-44 182.6 233 81.5
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 9.2e-44 181.4 263 73.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.2e-43 181.0 252 67.9
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.5e-43 179.5 227 82.4
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 3.5e-43 179.5 229 81.7
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.0e-42 176.4 227 82.4
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.9e-42 176.0 234 79.9
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 6.6e-42 175.3 259 70.7
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 4.3e-41 172.6 255 72.5
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 5.6e-41 172.2 263 70.0
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.2e-40 168.7 267 57.7
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-39 167.2 238 77.3
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.2e-39 165.6 251 70.9
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.5e-38 164.1 215 82.8
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 4.3e-33 146.0 213 79.8
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 2.1e-32 143.7 83 83.1
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.1e-32 141.7 100 69.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.4e-30 136.0 85 77.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 4.2e-28 129.4 206 79.6
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.6e-27 125.9 268 65.3
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.3e-26 124.4 271 63.5
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 3.3e-25 119.8 247 57.1
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.6e-24 117.5 95 60.0
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 6.9e-23 112.1 74 70.3
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.0e-23 111.7 86 69.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.9e-21 105.9 83 65.1
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.8e-18 97.4 83 60.2
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 8.4e-13 78.6 53 73.6
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 3.4e-06 56.6 37 73.0
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.5e-06 56.2 53 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.0e-05 55.1 235 57.9


User provided reference genes

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