Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 5.4e-60 234.2 122 100.0
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 4.1e-44 181.4 122 80.3
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 4.6e-43 177.9 122 78.7
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 2.1e-40 169.1 118 74.6
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 8.1e-40 167.2 121 70.2
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.4e-39 166.4 121 72.7
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.4e-39 166.4 121 72.7
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.8e-39 166.0 121 71.1
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 1.8e-39 166.0 121 71.1
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.8e-39 166.0 121 71.1
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 1.8e-39 166.0 121 73.6
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 3.1e-39 165.2 121 71.9
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 8.9e-39 163.7 121 70.2
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 1.2e-38 163.3 114 71.1
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 1.2e-38 163.3 120 68.3
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 1.2e-38 163.3 122 74.6
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 1.5e-38 162.9 121 69.4
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 1.5e-38 162.9 121 69.4
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 2.6e-38 162.2 119 73.9
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 5.8e-38 161.0 121 71.1
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 5.8e-38 161.0 119 68.9
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 7.6e-38 160.6 115 73.0
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 7.6e-38 160.6 111 74.8
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 7.6e-38 160.6 120 69.2
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 7.6e-38 160.6 121 70.2
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 2.2e-37 159.1 110 73.6
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 2.9e-37 158.7 121 68.6
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 2.9e-37 158.7 109 71.6
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 4.9e-37 157.9 111 72.1
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 4.9e-37 157.9 120 69.2
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 6.4e-37 157.5 114 69.3
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 6.4e-37 157.5 116 69.8
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 8.3e-37 157.1 121 66.1
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.1e-36 156.8 121 68.6
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.1e-36 156.8 121 68.6
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 1.4e-36 156.4 121 66.1
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.4e-36 156.4 121 69.4
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.9e-36 156.0 110 70.0
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 5.4e-36 154.5 119 67.2
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 5.4e-36 154.5 108 72.2
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 5.4e-36 154.5 110 70.9
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 5.4e-36 154.5 119 66.4
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 7.1e-36 154.1 118 66.9
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 7.1e-36 154.1 110 70.0
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 1.2e-35 153.3 111 71.2
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.2e-35 153.3 114 68.4
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 1.6e-35 152.9 108 71.3
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 2.7e-35 152.1 118 66.1
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 2.7e-35 152.1 116 66.4
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 3.5e-35 151.8 121 63.6
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 4.6e-35 151.4 113 67.3
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 6.0e-35 151.0 114 66.7
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 7.8e-35 150.6 111 68.5
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 1.0e-34 150.2 110 69.1
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 1.3e-34 149.8 108 67.6
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 1.3e-34 149.8 115 67.8
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.3e-34 149.8 110 69.1
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 1.7e-34 149.4 107 69.2
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 2.3e-34 149.1 104 70.2
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 2.3e-34 149.1 120 65.0
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 5.1e-34 147.9 111 69.4
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 6.6e-34 147.5 111 68.5
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 8.6e-34 147.1 121 66.1
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 8.6e-34 147.1 121 66.1
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 8.6e-34 147.1 115 67.0
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.1e-33 146.7 111 68.5
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 4.3e-33 144.8 124 62.9
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.3e-33 144.8 108 67.6
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 5.6e-33 144.4 111 66.7
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 5.6e-33 144.4 109 67.0
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 7.3e-33 144.1 102 70.6
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 8.1e-32 140.6 111 65.8
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.8e-31 139.4 100 73.0
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.0e-31 138.3 108 67.6
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 5.2e-31 137.9 111 62.2
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.2e-30 136.7 121 58.7
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.5e-30 136.3 102 63.7
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 1.5e-30 136.3 102 62.7
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 2.0e-30 136.0 105 66.7
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 2.6e-30 135.6 110 59.1
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.4e-30 135.2 102 62.7
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.4e-29 131.0 119 59.7
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 3.2e-28 128.6 93 66.7
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.6e-27 126.3 114 55.3
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 2.1e-27 125.9 124 56.5
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 3.5e-27 125.2 116 56.9
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 6.0e-27 124.4 124 55.6
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 6.0e-27 124.4 109 59.6
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 3.0e-26 122.1 104 59.6
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.5e-25 119.8 89 68.5
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 1.5e-25 119.8 76 80.3
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.9e-25 119.4 76 78.9
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 4.3e-25 118.2 88 65.9
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.3e-25 117.5 119 56.3
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 2.1e-24 115.9 111 55.0
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 2.8e-24 115.5 115 53.9
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 1.1e-23 113.6 76 76.3
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.4e-23 113.2 114 53.5
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.1e-23 112.1 76 73.7
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.1e-23 112.1 76 73.7
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.9e-23 110.9 80 71.2
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 2.0e-22 109.4 80 70.0
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 2.6e-22 109.0 116 51.7
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 7.6e-22 107.5 108 52.8
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 7.6e-22 107.5 108 52.8
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 7.6e-22 107.5 74 68.9
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 1.7e-21 106.3 105 54.3
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 3.8e-21 105.1 74 67.6
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 8.4e-21 104.0 94 57.4
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.1e-20 103.6 71 69.0
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.4e-20 103.2 73 67.1
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 1.4e-20 103.2 108 50.0
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 2.4e-20 102.4 71 69.0
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.4e-20 102.4 71 69.0
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 5.4e-20 101.3 75 69.3
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.1e-20 100.9 73 65.8
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.1e-20 100.9 73 65.8
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 2.7e-19 99.0 59 79.7
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.7e-19 99.0 59 79.7
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 3.9e-18 95.1 105 43.8
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 2.5e-17 92.4 88 61.4
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 5.6e-17 91.3 89 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 1.1e-15 87.0 107 39.3
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 3.4e-14 82.0 82 47.6
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 4.5e-14 81.6 106 39.6
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 1.0e-10 70.5 83 47.0
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 1.8e-10 69.7 43 79.1
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 5.1e-10 68.2 90 34.4
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.8e-07 59.7 49 59.2


User provided reference genes

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