Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 5.9e-166 587.4 288 100.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 1.8e-159 565.8 288 95.5
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 7.3e-140 500.7 288 84.4
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.9e-124 449.5 288 78.5
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.4e-98 363.6 290 64.1
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 3.4e-97 359.0 297 64.0
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 8.4e-96 354.4 283 63.6
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 6.7e-93 344.7 294 62.2
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 6.7e-93 344.7 294 60.5
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 7.4e-92 341.3 236 68.6
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 2.8e-91 339.3 274 65.0
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.7e-91 339.0 248 67.3
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 6.2e-91 338.2 253 65.6
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 8.1e-91 337.8 268 62.3
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.4e-90 337.0 228 71.1
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 2.4e-90 336.3 281 60.5
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 2.4e-90 336.3 263 63.5
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 3.1e-90 335.9 268 60.1
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 4.0e-90 335.5 240 69.2
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 4.0e-90 335.5 291 60.1
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 5.3e-90 335.1 257 63.4
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 5.3e-90 335.1 257 63.4
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 5.3e-90 335.1 226 70.8
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 5.3e-90 335.1 292 59.9
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.0e-89 333.2 271 60.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.6e-89 332.8 264 60.6
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 2.6e-89 332.8 276 61.2
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 3.4e-89 332.4 239 65.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 4.5e-89 332.0 287 59.9
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 5.8e-89 331.6 266 61.3
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 7.6e-89 331.3 226 69.5
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.0e-88 330.9 245 66.1
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.3e-88 330.5 298 59.1
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 1.7e-88 330.1 248 62.5
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.9e-88 329.3 271 62.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.4e-87 327.0 226 67.3
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.9e-87 326.6 271 62.4
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 4.2e-87 325.5 222 69.4
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 4.2e-87 325.5 226 69.5
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 9.3e-87 324.3 279 59.5
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 6.0e-86 321.6 228 67.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.0e-85 320.9 226 69.0
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 8.7e-85 317.8 278 57.2
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 1.5e-84 317.0 226 65.5
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 4.3e-84 315.5 226 65.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 4.3e-84 315.5 252 59.5
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 4.3e-84 315.5 240 63.3
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 9.6e-84 314.3 278 56.5
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.3e-83 313.9 224 65.6
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 2.1e-83 313.2 226 65.5
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.8e-83 312.8 264 61.4
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.7e-83 312.4 273 56.4
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 6.3e-83 311.6 248 61.7
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 8.2e-83 311.2 278 56.1
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 2.4e-82 309.7 226 65.0
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 3.1e-82 309.3 224 66.1
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.1e-82 308.9 227 65.2
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 4.1e-82 308.9 227 65.2
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 5.3e-82 308.5 226 63.3
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 5.9e-81 305.1 226 62.8
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.0e-80 304.3 227 64.3
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.2e-80 303.1 269 56.5
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.8e-80 302.4 232 62.1
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 6.5e-80 301.6 225 63.1
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 8.5e-80 301.2 225 62.2
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 8.5e-80 301.2 225 62.2
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 1.1e-79 300.8 288 53.8
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 2.5e-79 299.7 225 62.7
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 2.5e-79 299.7 225 62.7
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 3.2e-79 299.3 232 62.9
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 3.0e-77 292.7 227 63.0
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.5e-76 289.7 242 62.8
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 4.3e-76 288.9 241 60.6
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.3e-75 287.3 242 62.4
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 4.8e-75 285.4 240 62.5
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.4e-74 283.9 242 62.0
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.7e-72 276.9 218 63.3
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 3.8e-72 275.8 228 57.0
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 3.8e-72 275.8 257 56.0
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.9e-71 273.5 297 48.5
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 3.2e-71 272.7 211 63.0
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 5.1e-69 265.4 217 60.4
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 8.8e-69 264.6 225 56.9
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.2e-67 260.0 237 54.4
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.1e-66 257.7 224 58.9
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 6.9e-66 255.0 224 58.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 9.1e-66 254.6 239 51.5
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 2.1e-62 243.4 190 63.2
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 7.9e-62 241.5 221 48.9
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 7.4e-60 235.0 165 66.7
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.6e-57 227.3 162 67.9
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.0e-56 224.6 177 61.0
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.8e-56 222.6 182 61.5
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.0e-53 212.6 288 43.8
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.5e-49 199.5 181 53.6
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 9.4e-47 191.4 222 41.4
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.6e-46 189.5 177 57.1
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 1.0e-45 188.0 134 64.2
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 4.8e-43 179.1 222 40.1
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 8.3e-43 178.3 222 41.0
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.9e-41 172.2 177 50.3
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.0e-40 171.4 133 60.2
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 5.6e-31 139.0 106 62.3
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.8e-30 136.7 242 31.4
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 3.7e-27 126.3 127 51.2
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.4e-26 123.6 92 63.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 4.1e-26 122.9 219 28.8
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.5e-25 119.8 194 32.0
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.2e-22 111.3 79 63.3
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 7.5e-20 102.1 113 48.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 1.7e-19 100.9 203 30.0
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 8.3e-19 98.6 226 27.9
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 5.6e-15 85.9 115 38.3
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.2e-12 78.2 216 25.9
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 9.8e-12 75.1 205 26.8
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 9.8e-12 75.1 263 24.7
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 2.2e-11 73.9 271 25.5
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 3.7e-11 73.2 271 24.4
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 3.7e-11 73.2 258 23.6
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 6.4e-11 72.4 211 26.5
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 8.3e-11 72.0 265 23.8
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 1.1e-10 71.6 268 24.3
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 1.9e-10 70.9 259 20.8
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 3.2e-10 70.1 217 24.9
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 4.1e-10 69.7 219 24.7
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 5.4e-10 69.3 218 24.8
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 7.1e-10 68.9 257 20.6
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 9.2e-10 68.6 68 55.9
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 1.2e-09 68.2 282 23.8
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 1.6e-09 67.8 216 23.1
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 1.6e-09 67.8 221 26.2
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 2.7e-09 67.0 269 23.8
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 2.7e-09 67.0 218 23.9
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.7e-09 67.0 217 24.0
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 4.6e-09 66.2 218 23.9
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 6.0e-09 65.9 271 21.8
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 6.0e-09 65.9 259 23.9
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 7.8e-09 65.5 221 26.7
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 7.8e-09 65.5 221 24.0
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 1.0e-08 65.1 218 23.4
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.0e-08 65.1 100 43.0
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.3e-08 64.7 270 23.0
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 1.7e-08 64.3 220 24.1
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.7e-08 64.3 217 24.0
SEGI_09665 Sequoiadendron giganteum HOM05D003252 ORTHO05D003640 2.3e-08 63.9 261 21.5
TPR.G9445 Trifolium pratense HOM05D003252 ORTHO05D003640 2.3e-08 63.9 199 25.6
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 3.9e-08 63.2 219 22.4
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 5.1e-08 62.8 273 22.0
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 5.1e-08 62.8 271 23.2
Lj6g0011531 Lotus japonicus HOM05D003252 ORTHO05D003640 5.1e-08 62.8 216 23.6
Psat4g017400 Pisum sativum HOM05D003252 ORTHO05D003640 5.1e-08 62.8 263 22.1
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 5.1e-08 62.8 206 26.2
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 6.6e-08 62.4 203 22.2
BcaC01g01254 Brassica carinata HOM05D003252 ORTHO05D003640 8.6e-08 62.0 219 23.7
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 8.6e-08 62.0 273 21.6
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 8.6e-08 62.0 219 21.9
Potri.011G125701 Populus trichocarpa HOM05D003252 ORTHO05D003640 1.1e-07 61.6 241 22.0
Sabra16G0273800 Salix brachista HOM05D003252 ORTHO05D003640 1.1e-07 61.6 275 23.6
Sabra16G0274300 Salix brachista HOM05D003252 ORTHO05D003640 1.1e-07 61.6 275 23.6
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 1.5e-07 61.2 257 21.0
Cpa.g.sc28.70 Carica papaya HOM05D003252 ORTHO05D003640 1.5e-07 61.2 219 21.9
GSVIVG01015103001 Vitis vinifera HOM05D003252 ORTHO05D003640 1.5e-07 61.2 220 21.8
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 1.9e-07 60.8 269 21.9
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 1.9e-07 60.8 264 21.6
Sabra16G0278400 Salix brachista HOM05D003252 ORTHO05D003640 2.5e-07 60.5 275 23.3
VMungo1215G3032 Vigna mungo HOM05D003252 ORTHO05D003640 2.5e-07 60.5 217 23.0
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 5.6e-07 59.3 231 22.5
Aqoxy7G04125 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 9.5e-07 58.5 219 22.4
Lalb_Chr13g0299531 Lupinus albus HOM05D003252 ORTHO05D003640 9.5e-07 58.5 220 22.7
Potri.001G413500 Populus trichocarpa HOM05D003252 ORTHO05D003640 9.5e-07 58.5 217 23.0
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 1.2e-06 58.2 222 23.4
A08p03000 Brassica napus HOM05D003252 ORTHO05D003640 1.6e-06 57.8 222 24.3
BraA08t32332Z Brassica rapa HOM05D003252 ORTHO05D003640 2.1e-06 57.4 222 24.8
Thhalv10011777m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 2.1e-06 57.4 216 25.0
Glyma.17G050600 Glycine max HOM05D003252 ORTHO05D003640 2.8e-06 57.0 220 23.6
Medtr4g125530 Medicago truncatula HOM05D003252 ORTHO05D003640 2.8e-06 57.0 268 21.3
TWI63G0970 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 2.8e-06 57.0 264 21.6
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 6.2e-06 55.8 192 25.5
C03p89840 Brassica napus HOM05D003252 ORTHO05D003640 8.1e-06 55.5 222 23.9
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 8.1e-06 55.5 266 21.1
Sabra11G0116400 Salix brachista HOM05D003252 ORTHO05D003640 8.1e-06 55.5 200 23.0


User provided reference genes

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