Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.8e-220 768.8 367 100.0
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.3e-189 666.4 397 83.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 5.2e-175 617.8 377 81.4
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.6e-171 606.3 373 80.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 4.9e-141 505.0 340 74.1
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.4e-140 503.4 341 73.9
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.8e-139 497.7 381 67.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.7e-138 496.5 337 73.3
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.3e-138 496.1 341 72.1
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 8.7e-138 494.2 339 71.4
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 3.3e-137 492.3 349 70.5
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.6e-136 490.0 337 73.0
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.6e-136 490.0 368 67.4
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 4.8e-136 488.4 344 69.8
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 8.1e-136 487.6 337 72.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 8.1e-136 487.6 336 72.3
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 2.4e-135 486.1 333 72.1
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.0e-134 483.0 337 71.5
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 5.8e-134 481.5 341 71.0
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.3e-133 480.3 331 72.8
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 2.2e-133 479.6 337 70.0
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.8e-133 478.8 340 70.0
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 6.4e-133 478.0 329 71.4
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.1e-131 473.0 327 72.8
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 2.7e-131 472.6 369 66.9
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.3e-130 469.5 337 70.0
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 8.7e-130 467.6 326 70.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.9e-129 466.5 366 63.1
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.5e-129 466.1 367 62.4
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 5.6e-129 464.9 333 69.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.4e-129 464.5 368 62.5
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.1e-128 463.0 318 71.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.2e-128 461.5 366 62.0
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-127 460.7 334 69.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.8e-127 459.9 320 71.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 2.4e-127 459.5 332 68.1
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 4.0e-127 458.8 324 70.4
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 4.0e-127 458.8 315 71.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 6.9e-127 458.0 317 69.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 6.9e-127 458.0 366 64.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.2e-126 457.2 331 68.3
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.5e-126 456.8 323 69.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.0e-126 456.4 332 69.0
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 2.6e-126 456.1 329 67.8
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 4.5e-126 455.3 323 68.7
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 5.8e-126 454.9 321 69.2
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.9e-126 454.1 328 68.6
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.9e-126 454.1 328 68.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.9e-126 454.1 358 62.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.3e-125 453.8 252 82.1
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.2e-125 453.0 317 70.3
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.2e-125 453.0 317 70.3
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.9e-125 452.6 324 69.4
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.9e-125 452.6 317 70.3
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 2.9e-125 452.6 324 69.4
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.9e-125 451.8 345 65.5
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 6.4e-125 451.4 335 68.1
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.4e-124 449.5 336 66.4
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.2e-124 449.1 329 69.0
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.2e-124 448.7 336 66.1
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 5.5e-124 448.4 336 66.7
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 6.0e-123 444.9 359 62.7
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.3e-122 443.7 310 71.0
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.3e-122 443.7 335 66.9
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 2.3e-122 443.0 330 66.1
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.1e-122 441.8 336 66.4
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.3e-120 437.2 334 66.8
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.6e-120 436.8 315 67.9
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 3.7e-120 435.6 333 64.0
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.7e-120 435.6 339 64.9
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.1e-119 434.1 321 67.3
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.4e-119 433.7 328 65.5
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 5.3e-119 431.8 247 81.8
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.6e-118 429.5 345 64.6
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 4.9e-117 425.2 319 64.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 4.9e-117 425.2 358 62.3
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.4e-116 423.7 323 64.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.5e-115 419.1 322 67.1
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.8e-114 416.8 242 79.3
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.3e-114 416.4 338 63.9
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 2.5e-113 412.9 344 62.5
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.8e-112 409.5 338 62.4
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 2.8e-112 409.5 350 60.3
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.4e-108 397.1 350 59.4
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 4.2e-108 395.6 321 62.9
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.8e-104 382.9 324 60.5
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.4e-103 379.8 316 63.3
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 4.5e-102 375.6 359 55.4
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 8.5e-101 371.3 320 57.8
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.2e-99 367.5 315 61.3
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.5e-97 360.5 333 54.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 8.2e-96 354.8 297 61.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.4e-95 354.0 192 83.9
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.4e-95 354.0 269 66.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.0e-94 350.1 230 69.6
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 5.0e-93 345.5 249 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.1e-91 340.1 353 52.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-85 320.5 193 77.7
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.2e-84 316.2 280 56.8
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.3e-80 304.3 280 55.0
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.1e-79 299.3 365 51.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 7.2e-76 288.5 277 53.1
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.0e-74 284.6 301 48.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.5e-68 264.2 196 62.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.0e-65 253.8 344 45.3
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-64 250.8 227 52.9
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 4.7e-59 232.6 123 83.7
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 7.5e-57 225.3 118 81.4
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.0e-53 214.9 201 56.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 4.3e-52 209.5 228 51.8
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.4e-49 199.9 114 82.5
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-48 198.0 206 55.3
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 4.1e-47 193.0 112 81.2
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.2e-39 166.8 183 53.0
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 7.8e-38 162.2 270 40.0
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.8e-35 153.7 180 44.4
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.8e-35 153.7 94 74.5
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.0e-34 149.8 173 51.4
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 4.3e-28 129.8 62 87.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.0e-25 120.9 301 29.6
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.1e-23 115.2 98 62.2
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.4e-23 114.8 73 75.3
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-21 108.2 61 88.5
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 8.7e-21 105.5 190 39.5
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.1e-20 105.1 55 74.5
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.9e-20 104.4 192 40.6
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.9e-20 104.4 144 45.8
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 6.2e-19 99.4 63 77.8
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 5.3e-18 96.3 79 67.1
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.9e-16 90.5 78 56.4
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.4e-15 87.4 114 43.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.5e-12 78.2 55 74.5
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 3.7e-11 73.6 179 30.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.3e-10 69.7 39 87.2
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 4.5e-09 66.6 61 55.7


User provided reference genes

Program Settings