Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 4.5e-169 597.8 298 100.0
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.4e-165 586.3 298 98.0
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 6.8e-157 557.4 329 86.3
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.1e-154 550.1 298 90.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 2.0e-145 519.2 298 85.2
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.9e-144 515.0 298 85.2
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 3.6e-142 508.4 298 83.2
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 8.0e-142 507.3 298 83.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 8.0e-142 507.3 292 83.2
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.0e-141 506.9 292 84.2
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.8e-141 506.1 298 82.9
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 3.1e-141 505.4 309 81.6
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 4.0e-141 505.0 298 83.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 5.8e-140 501.1 293 82.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 7.5e-140 500.7 292 83.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 9.8e-140 500.4 299 81.6
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.2e-139 499.2 293 81.9
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 8.3e-139 497.3 298 81.5
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 8.3e-139 497.3 298 81.5
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.9e-138 496.1 298 81.5
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.4e-138 495.7 298 80.9
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.0e-138 494.2 299 81.6
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.7e-137 492.3 299 81.3
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 4.6e-137 491.5 298 78.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.6e-137 491.5 299 80.9
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 6.0e-137 491.1 299 80.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 6.0e-137 491.1 295 81.7
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 6.0e-137 491.1 298 79.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.0e-136 490.3 331 74.6
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.3e-136 490.0 292 82.9
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 3.9e-136 488.4 298 79.9
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 5.0e-136 488.0 298 80.5
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 8.6e-136 487.3 302 80.1
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.9e-135 486.1 298 79.2
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.9e-135 486.1 294 80.6
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 3.3e-135 485.3 293 79.9
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 4.3e-135 485.0 292 80.8
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 77.9
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 78.9
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.8e-134 482.3 298 79.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 6.2e-134 481.1 299 78.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 1.1e-133 480.3 299 78.9
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.1e-133 480.3 302 78.5
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 2.3e-133 479.2 297 76.8
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 3.1e-133 478.8 296 77.7
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.1e-133 478.8 298 78.9
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 78.9
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 77.9
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 8.9e-133 477.2 294 79.3
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.2e-132 476.9 298 78.2
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.5e-132 476.5 298 78.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.0e-132 476.1 291 79.7
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 2.6e-132 475.7 298 78.5
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 77.5
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 5.8e-132 474.6 298 78.5
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 7.5e-132 474.2 293 77.8
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 1.3e-131 473.4 298 77.5
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 6.4e-131 471.1 291 78.0
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 8.3e-131 470.7 292 79.8
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.9e-130 469.5 297 76.8
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 4.1e-130 468.4 298 77.2
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 4.1e-130 468.4 292 79.1
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.4e-130 468.0 293 76.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.1e-129 466.1 298 77.2
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 7.8e-129 464.2 276 81.5
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.3e-128 463.4 333 71.2
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.3e-128 462.6 298 76.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.3e-127 458.4 282 79.1
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 7.3e-127 457.6 294 75.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 9.5e-127 457.2 298 74.8
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.2e-126 456.8 294 74.8
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.2e-126 456.8 291 76.3
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.1e-126 456.1 294 74.5
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 2.1e-126 456.1 294 74.5
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.1e-126 456.1 294 74.5
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.1e-126 456.1 294 74.5
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.2e-125 451.4 311 74.3
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.5e-124 449.9 298 73.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 2.0e-124 449.5 298 73.2
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 3.4e-124 448.7 298 72.1
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.4e-124 448.4 298 73.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.3e-123 446.8 298 75.2
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 4.1e-122 441.8 277 79.4
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 8.6e-120 434.1 268 82.8
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 2.5e-119 432.6 249 83.1
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 5.6e-119 431.4 272 80.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.1e-118 429.5 239 86.2
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.1e-117 427.2 295 71.9
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.9e-115 419.1 238 84.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 3.2e-114 415.6 287 69.7
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 7.1e-114 414.5 291 70.1
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 3.0e-112 409.1 267 74.2
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.3e-111 405.6 247 81.4
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 4.3e-111 405.2 242 80.6
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.7e-107 393.3 221 85.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 6.0e-97 358.2 237 73.4
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 3.5e-89 332.4 287 56.8
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 6.0e-89 331.6 294 56.5
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 6.0e-89 331.6 295 56.6
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 4.1e-85 318.9 282 63.8
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.6e-84 316.2 410 47.3
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 7.6e-84 314.7 208 73.1
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 2.5e-66 256.5 272 52.6
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.2e-62 243.4 258 57.0
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.5e-58 230.7 146 79.5
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 8.8e-56 221.5 292 40.1
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 2.0e-55 220.3 251 44.6
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.2e-51 206.8 120 83.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 8.5e-51 204.9 117 76.9
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 7.5e-47 191.8 190 53.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.4e-45 186.8 218 51.4
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 4.7e-41 172.6 175 56.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.9e-34 150.6 111 66.7
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 3.3e-34 149.8 230 41.7
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.3e-27 127.9 81 81.5
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.0e-24 118.2 73 74.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 5.6e-18 95.9 60 76.7
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 7.3e-18 95.5 52 84.6
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.6e-15 87.0 48 75.0
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 4.4e-15 86.3 146 37.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 8.3e-14 82.0 47 78.7
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 5.4e-13 79.3 71 57.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 9.2e-13 78.6 52 65.4
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 4.6e-12 76.3 190 32.6
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 3.9e-11 73.2 59 66.1
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 5.6e-10 69.3 46 67.4
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 3.6e-09 66.6 190 28.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 8.1e-09 65.5 184 32.1
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 8.1e-09 65.5 62 58.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 5.2e-08 62.8 164 31.7
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 7.6e-07 58.9 82 46.3
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 9.9e-07 58.5 171 30.4
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.3e-06 58.2 94 43.6
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 1.7e-06 57.8 115 39.1
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 2.2e-06 57.4 52 53.8
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 8.4e-06 55.5 170 27.1


User provided reference genes

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