Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.9e-150 535.8 274 100.0
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 1.5e-118 429.9 224 98.2
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 6.7e-111 404.4 224 93.3
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 4.5e-99 365.2 229 81.2
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 3.8e-98 362.1 229 79.9
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 3.2e-97 359.0 224 82.1
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 4.2e-97 358.6 232 78.9
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 5.5e-97 358.2 224 81.7
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 2.8e-96 355.9 207 90.3
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 8.0e-96 354.4 224 80.8
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.0e-95 354.0 218 82.1
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 2.3e-95 352.8 224 80.8
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 3.0e-95 352.4 243 75.3
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 8.8e-95 350.9 230 79.1
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 2.6e-94 349.4 228 76.3
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 2.6e-94 349.4 224 79.5
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.4e-94 348.6 224 79.0
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 5.7e-94 348.2 219 79.5
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.3e-93 347.1 224 78.6
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 1.7e-93 346.7 224 78.6
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.7e-93 346.7 204 84.8
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 2.2e-93 346.3 224 77.7
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.8e-92 343.2 224 78.6
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 1.8e-92 343.2 219 79.5
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.4e-92 342.8 222 78.4
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 9.2e-92 340.9 220 77.7
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 9.2e-92 340.9 214 80.4
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.2e-91 340.5 220 77.3
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 1.2e-91 340.5 224 77.2
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 1.6e-91 340.1 224 78.1
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 3.5e-91 339.0 221 78.3
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 4.5e-91 338.6 219 80.4
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.9e-91 338.2 221 77.4
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 7.8e-91 337.8 224 76.8
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.0e-90 337.4 222 76.1
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 1.0e-90 337.4 242 71.9
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 2.3e-90 336.3 242 73.6
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 2.9e-90 335.9 231 74.5
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 3.8e-90 335.5 218 76.6
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 3.8e-90 335.5 224 77.7
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 3.8e-90 335.5 219 77.6
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 6.6e-90 334.7 214 78.5
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 6.6e-90 334.7 222 77.0
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 8.6e-90 334.3 224 76.3
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 1.5e-89 333.6 218 77.5
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 3.3e-89 332.4 224 73.2
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 5.6e-89 331.6 214 79.0
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 9.5e-89 330.9 222 75.7
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 1.2e-88 330.5 224 75.9
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 2.1e-88 329.7 214 77.6
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 4.0e-87 325.5 227 73.1
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 5.2e-87 325.1 224 74.6
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 5.2e-87 325.1 217 75.6
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 8.9e-87 324.3 216 75.0
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 8.9e-87 324.3 205 78.5
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 1.5e-86 323.6 220 74.5
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 2.0e-86 323.2 224 74.6
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 2.0e-86 323.2 224 74.6
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 2.6e-86 322.8 245 69.8
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 2.6e-86 322.8 224 74.6
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 4.4e-86 322.0 221 72.9
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 4.4e-86 322.0 218 76.1
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 4.4e-86 322.0 228 75.0
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 5.7e-86 321.6 224 74.1
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 2.2e-85 319.7 224 71.0
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 6.4e-85 318.2 212 76.9
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 8.3e-85 317.8 222 73.4
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 7.0e-84 314.7 224 72.8
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 9.2e-84 314.3 217 74.2
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 5.9e-83 311.6 221 72.9
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 6.6e-82 308.1 224 70.1
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 2.5e-81 306.2 222 71.6
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 2.5e-81 306.2 224 67.4
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 7.3e-81 304.7 222 72.1
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.2e-80 303.9 224 71.9
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.1e-79 300.8 262 65.6
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 4.0e-79 298.9 216 70.4
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 4.0e-79 298.9 243 65.8
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 6.8e-79 298.1 219 69.4
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 6.8e-79 298.1 197 78.2
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 2.6e-78 296.2 216 69.9
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 4.4e-78 295.4 228 68.9
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.3e-77 293.9 221 67.9
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 5.4e-76 288.5 211 72.0
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 2.7e-75 286.2 225 68.4
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 4.6e-75 285.4 219 67.6
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.7e-74 283.5 198 73.2
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 3.0e-74 282.7 220 65.5
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 3.9e-74 282.3 246 64.2
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 8.6e-74 281.2 273 57.5
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 1.1e-71 274.2 225 64.0
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 5.8e-70 268.5 207 67.6
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 4.9e-69 265.4 175 74.9
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.4e-69 265.0 228 65.4
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 7.6e-62 241.5 154 76.6
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.4e-60 237.3 217 58.5
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 3.2e-60 236.1 153 77.1
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.7e-59 233.0 279 51.3
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 3.0e-58 229.6 221 54.3
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 1.5e-57 227.3 205 60.5
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.9e-57 226.9 160 70.6
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 3.1e-55 219.5 227 54.2
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.2e-54 217.6 208 60.6
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.7e-50 203.8 143 69.2
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.3e-47 192.2 199 56.8
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 6.9e-47 191.8 120 75.8
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 2.6e-46 189.9 221 48.4
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 4.3e-41 172.6 151 56.3
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 6.9e-39 165.2 236 41.1
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 6.7e-34 148.7 384 32.0
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.1e-33 147.9 122 61.5
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 2.5e-33 146.7 85 80.0
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 4.2e-28 129.4 84 70.2
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 5.9e-22 109.0 70 71.4
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 5.5e-20 102.4 143 46.2
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.4e-18 97.8 67 73.1
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 4.3e-17 92.8 66 75.8
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 2.8e-16 90.1 51 82.4
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 1.8e-15 87.4 67 71.6
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 2.4e-15 87.0 80 58.8
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 9.1e-15 85.1 195 32.8
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.8e-13 79.7 67 62.7
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 2.7e-11 73.6 56 69.6
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 3.9e-10 69.7 99 38.4
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 6.3e-08 62.4 53 62.3
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.1e-07 59.7 57 57.9
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 5.3e-07 59.3 45 66.7


User provided reference genes

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