Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G018110 Cucumis sativus L. HOM05D007422 ORTHO05D009333 3.6e-36 154.5 81 100.0
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 1.6e-31 139.0 76 94.7
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 1.4e-27 125.9 74 85.1
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 2.3e-27 125.2 74 85.1
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 6.8e-27 123.6 74 82.4
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 6.8e-27 123.6 74 82.4
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 8.9e-27 123.2 71 87.3
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 1.5e-26 122.5 74 82.4
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 2.0e-26 122.1 79 77.2
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 2.6e-26 121.7 76 80.3
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 1.7e-25 119.0 72 81.9
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 2.9e-25 118.2 71 84.5
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 2.9e-25 118.2 74 81.1
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 2.9e-25 118.2 71 84.5
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 3.7e-25 117.9 73 80.8
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 3.7e-25 117.9 72 81.9
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 4.9e-25 117.5 73 80.8
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 4.9e-25 117.5 77 77.9
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 8.3e-25 116.7 75 77.3
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 8.3e-25 116.7 71 83.1
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 1.1e-24 116.3 72 80.6
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 1.1e-24 116.3 72 80.6
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 1.8e-24 115.5 74 77.0
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 2.4e-24 115.2 79 74.7
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 3.2e-24 114.8 72 81.9
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 4.1e-24 114.4 76 76.3
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 4.1e-24 114.4 75 77.3
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 5.4e-24 114.0 76 71.1
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 5.4e-24 114.0 70 81.4
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 5.4e-24 114.0 70 81.4
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 7.0e-24 113.6 76 72.4
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 9.2e-24 113.2 72 77.8
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 1.6e-23 112.5 70 80.0
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 2.0e-23 112.1 70 80.0
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 2.0e-23 112.1 71 76.1
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 2.0e-23 112.1 71 76.1
EL10Ac6g15266 Beta vulgaris HOM05D007422 ORTHO05D009333 2.7e-23 111.7 77 71.4
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 2.7e-23 111.7 79 70.9
GSVIVG01026559001 Vitis vinifera HOM05D007422 ORTHO05D009333 2.7e-23 111.7 72 80.6
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 3.5e-23 111.3 75 73.3
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 3.5e-23 111.3 70 78.6
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 4.6e-23 110.9 71 77.5
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 4.6e-23 110.9 71 80.3
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 4.6e-23 110.9 75 73.3
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 5.9e-23 110.5 71 77.5
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 5.9e-23 110.5 71 77.5
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 5.9e-23 110.5 79 68.4
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 7.8e-23 110.2 69 81.2
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 7.8e-23 110.2 69 79.7
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 1.0e-22 109.8 71 77.5
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 1.0e-22 109.8 71 77.5
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 1.3e-22 109.4 71 77.5
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 1.7e-22 109.0 71 77.5
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 1.7e-22 109.0 74 71.6
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 1.7e-22 109.0 70 78.6
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 2.3e-22 108.6 70 78.6
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 2.3e-22 108.6 72 72.2
Eucgr.H04923 Eucalyptus grandis HOM05D007422 ORTHO05D009333 3.0e-22 108.2 74 74.3
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 3.0e-22 108.2 70 77.1
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 3.0e-22 108.2 70 78.6
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 3.9e-22 107.8 72 73.6
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 3.9e-22 107.8 75 69.3
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 5.0e-22 107.5 71 74.6
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 5.0e-22 107.5 70 78.6
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 5.0e-22 107.5 70 77.1
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 5.0e-22 107.5 74 68.9
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 5.0e-22 107.5 74 67.6
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 8.6e-22 106.7 70 77.1
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 8.6e-22 106.7 70 77.1
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 8.6e-22 106.7 71 74.6
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 1.1e-21 106.3 76 68.4
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 1.1e-21 106.3 68 77.9
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 1.5e-21 105.9 70 77.1
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 1.5e-21 105.9 71 73.2
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 1.9e-21 105.5 70 75.7
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 1.9e-21 105.5 64 81.2
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 3.3e-21 104.8 71 73.2
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 3.3e-21 104.8 71 73.2
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 3.3e-21 104.8 93 63.4
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 4.3e-21 104.4 71 73.2
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 7.3e-21 103.6 71 69.0
Dinv05702 Davidia involucrata HOM05D007422 ORTHO05D009333 4.7e-20 100.9 63 82.5
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 1.4e-16 89.4 53 81.1
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 2.7e-15 85.1 71 64.8
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 1.3e-14 82.8 71 53.5
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 4.3e-13 77.8 77 55.8
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 2.1e-12 75.5 74 56.8
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 3.1e-11 71.6 71 56.3
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 1.4e-08 62.8 64 56.2
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 1.9e-08 62.4 32 90.6
Sabra05G0049000 Salix brachista HOM05D007422 ORTHO05D009333 1.6e-07 59.3 50 68.0
RcHm_v2.0_Chr2g0118341 Rosa chinensis HOM05D007422 ORTHO05D009333 2.7e-07 58.5 42 71.4
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 1.3e-06 56.2 33 75.8
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 3.0e-06 55.1 66 39.4
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 3.9e-06 54.7 35 71.4
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 6.6e-06 53.9 66 39.4
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 6.6e-06 53.9 66 40.9
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 6.6e-06 53.9 66 40.9
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 6.6e-06 53.9 66 40.9
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 6.6e-06 53.9 66 40.9
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 6.6e-06 53.9 66 40.9
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 40.0
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 6.6e-06 53.9 66 40.9
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 6.6e-06 53.9 66 48.5
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 6.6e-06 53.9 66 40.9
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 6.6e-06 53.9 66 39.4
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 38.5
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 40.0
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 40.0
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 40.0
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 6.6e-06 53.9 65 40.0
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 37.9
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 8.6e-06 53.5 65 38.5
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 8.6e-06 53.5 65 38.5
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 8.6e-06 53.5 65 40.0
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 8.6e-06 53.5 66 39.4


User provided reference genes

Program Settings