Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 1.3e-58 229.6 120 100.0
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 9.0e-52 206.8 120 89.2
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.5e-51 206.1 113 93.8
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.8e-44 182.6 121 76.9
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 9.1e-44 180.3 120 76.7
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.6e-43 178.7 121 75.2
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 3.4e-43 178.3 121 75.2
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.0e-42 176.8 103 89.3
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.3e-42 176.4 121 74.4
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 3.8e-42 174.9 103 88.3
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 6.5e-42 174.1 121 73.6
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.1e-41 173.3 120 71.7
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.4e-41 172.9 121 71.9
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 1.9e-41 172.6 113 76.1
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 1.9e-41 172.6 120 73.3
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.5e-41 172.2 121 71.9
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 2.5e-41 172.2 121 75.2
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 2.5e-41 172.2 120 73.3
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 4.2e-41 171.4 121 73.6
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 5.5e-41 171.0 121 72.7
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 9.4e-41 170.2 120 73.3
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-40 169.9 112 74.1
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.2e-40 169.9 121 72.7
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.6e-40 169.5 121 72.7
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 2.1e-40 169.1 121 71.9
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 2.1e-40 169.1 120 70.8
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 2.7e-40 168.7 121 71.1
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.6e-40 168.3 115 76.5
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.6e-40 168.3 121 72.7
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 6.1e-40 167.5 114 74.6
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.0e-39 166.8 121 70.2
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.0e-39 166.8 121 70.2
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 1.0e-39 166.8 121 71.9
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.4e-39 166.4 114 74.6
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 1.4e-39 166.4 121 71.1
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.4e-39 166.4 112 76.8
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.4e-39 166.4 114 74.6
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 1.8e-39 166.0 120 70.8
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 1.8e-39 166.0 112 75.9
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 3.0e-39 165.2 115 71.3
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 3.9e-39 164.9 113 73.5
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 5.1e-39 164.5 113 73.5
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 5.1e-39 164.5 121 71.1
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 6.7e-39 164.1 121 71.1
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 6.7e-39 164.1 115 70.4
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 6.7e-39 164.1 113 73.5
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 8.8e-39 163.7 120 70.0
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 8.8e-39 163.7 121 68.6
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.1e-38 163.3 113 72.6
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.1e-38 163.3 121 71.9
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 2.0e-38 162.5 111 73.0
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.6e-38 162.2 115 70.4
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 3.3e-38 161.8 115 70.4
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 3.3e-38 161.8 115 70.4
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 3.3e-38 161.8 121 68.6
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 4.4e-38 161.4 113 71.7
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 5.7e-38 161.0 113 71.7
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 5.7e-38 161.0 113 71.7
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 5.7e-38 161.0 113 71.7
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 5.7e-38 161.0 113 71.7
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 5.7e-38 161.0 113 71.7
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 7.4e-38 160.6 121 67.8
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 7.4e-38 160.6 115 70.4
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 9.7e-38 160.2 117 69.2
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 9.7e-38 160.2 121 68.6
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 1.3e-37 159.8 114 70.2
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.3e-37 159.8 113 70.8
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.7e-37 159.5 120 69.2
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.2e-37 159.1 109 73.4
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.2e-37 159.1 121 67.8
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.2e-37 159.1 121 67.8
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 2.8e-37 158.7 121 71.9
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 3.7e-37 158.3 121 70.2
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 3.7e-37 158.3 108 70.4
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 1.4e-36 156.4 101 75.2
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 1.4e-36 156.4 118 67.8
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 2.4e-36 155.6 121 71.1
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 3.1e-36 155.2 114 70.2
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 3.1e-36 155.2 114 68.4
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 5.3e-36 154.5 114 70.2
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 2.0e-35 152.5 104 76.9
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 4.5e-35 151.4 112 71.4
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 4.5e-35 151.4 121 66.1
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.7e-34 149.4 121 64.5
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 3.8e-34 148.3 105 71.4
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 6.5e-34 147.5 99 71.7
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 6.5e-34 147.5 103 75.7
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 1.1e-33 146.7 114 66.7
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 1.1e-33 146.7 106 70.8
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.4e-33 146.4 116 60.3
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.5e-33 145.6 108 66.7
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.5e-33 145.6 108 70.4
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 3.2e-33 145.2 104 73.1
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.2e-33 145.2 146 56.2
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 4.2e-33 144.8 106 67.9
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 5.5e-33 144.4 112 66.1
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 5.5e-33 144.4 104 71.2
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.2e-32 143.3 121 62.8
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.6e-32 142.9 104 67.3
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 3.6e-32 141.7 109 66.1
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 8.0e-32 140.6 103 67.0
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 1.4e-31 139.8 103 66.0
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 2.3e-31 139.0 106 67.0
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 2.3e-31 139.0 89 76.4
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.3e-31 139.0 104 67.3
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 3.0e-31 138.7 113 66.4
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 8.8e-31 137.1 98 67.3
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 2.0e-30 136.0 98 69.4
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 2.6e-30 135.6 89 79.8
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 7.4e-30 134.0 90 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 9.7e-30 133.7 103 62.1
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 4.8e-29 131.3 99 68.7
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 6.3e-29 131.0 108 63.9
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 6.3e-29 131.0 103 66.0
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 8.2e-29 130.6 121 57.9
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 8.2e-29 130.6 111 58.6
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.4e-28 129.8 95 67.4
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 2.4e-28 129.0 104 64.4
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 5.3e-28 127.9 98 67.3
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 7.0e-28 127.5 96 67.7
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 7.0e-28 127.5 98 64.3
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 9.1e-28 127.1 98 64.3
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 1.2e-27 126.7 110 61.8
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 3.8e-26 121.7 102 62.7
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 3.8e-26 121.7 96 63.5
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 8.5e-26 120.6 93 63.4
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 1.2e-22 110.2 113 49.6
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 4.8e-21 104.8 109 58.7
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 3.1e-20 102.1 75 73.3
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.0e-19 99.4 70 71.4
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.9e-17 92.8 105 52.4
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 6.1e-16 87.8 62 74.2
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.3e-15 85.9 119 40.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 5.2e-15 84.7 79 57.0
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.3e-10 70.1 66 54.5
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 1.9e-09 66.2 81 46.9
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 4.2e-09 65.1 99 36.4
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 1.0e-07 60.5 101 33.7
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.4e-06 55.5 52 53.8


User provided reference genes

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