Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.7e-23 111.7 52 100.0
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 8.0e-13 76.3 45 80.0
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 8.0e-13 76.3 45 80.0
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.8e-12 75.1 45 77.8
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.3e-12 74.7 45 75.6
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 3.0e-12 74.3 46 76.1
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 3.0e-12 74.3 45 77.8
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.0e-12 73.9 45 75.6
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.0e-12 73.9 45 75.6
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 6.8e-12 73.2 45 73.3
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 6.8e-12 73.2 45 73.3
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 8.8e-12 72.8 45 75.6
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 8.8e-12 72.8 45 73.3
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 8.8e-12 72.8 45 73.3
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 8.8e-12 72.8 45 75.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 8.8e-12 72.8 45 73.3
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 75.6
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 73.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 75.6
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 75.6
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 73.3
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 73.3
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 73.3
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 75.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.2e-11 72.4 45 73.3
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.5e-11 72.0 45 71.1
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.0e-11 71.6 42 78.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 73.3
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 73.3
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.0e-11 71.6 45 75.6
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 3.4e-11 70.9 45 73.3
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 3.4e-11 70.9 42 76.2
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.4e-11 70.9 45 75.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 4.4e-11 70.5 45 75.6
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 5.7e-11 70.1 45 73.3
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 7.5e-11 69.7 45 71.1
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 7.5e-11 69.7 45 71.1
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 7.5e-11 69.7 45 71.1
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 9.8e-11 69.3 45 71.1
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.8e-11 69.3 45 73.3
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.3e-10 68.9 45 71.1
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-10 68.9 42 76.2
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.3e-10 68.9 45 68.9
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.3e-10 68.9 45 71.1
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.7e-10 68.6 44 70.5
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 3.7e-10 67.4 46 67.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.8e-10 67.0 45 68.9
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 6.3e-10 66.6 45 68.9
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 6.3e-10 66.6 45 68.9
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 6.3e-10 66.6 40 77.5
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 6.3e-10 66.6 43 72.1
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 6.3e-10 66.6 43 72.1
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 8.3e-10 66.2 40 75.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.3e-10 66.2 43 69.8
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.3e-10 66.2 43 69.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 8.3e-10 66.2 45 66.7
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 8.3e-10 66.2 40 72.5
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.1e-09 65.9 41 78.0
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.1e-09 65.9 43 72.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.1e-09 65.9 40 72.5
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.4e-09 65.5 45 66.7
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.4e-09 65.5 39 79.5
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.4e-09 65.5 45 68.9
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.4e-09 65.5 42 71.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.4e-09 65.5 43 72.1
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.8e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.8e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.8e-09 65.1 43 69.8
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.8e-09 65.1 45 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 2.4e-09 64.7 45 64.4
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.1e-09 64.3 47 61.7
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 4.1e-09 63.9 39 71.8
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 5.4e-09 63.5 45 66.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 5.4e-09 63.5 45 66.7
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 7.0e-09 63.2 43 69.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 9.1e-09 62.8 45 66.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.2e-08 62.4 45 64.4
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.2e-08 62.4 45 64.4
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.2e-08 62.4 45 64.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.6e-08 62.0 45 64.4
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.6e-08 62.0 45 64.4
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.6e-08 62.0 45 64.4
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 1.6e-08 62.0 45 64.4
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 2.7e-08 61.2 39 71.8
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 3.5e-08 60.8 45 62.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 7.7e-08 59.7 41 70.7
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 7.7e-08 59.7 45 62.2
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.0e-07 59.3 38 73.7
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.0e-07 59.3 45 60.0
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.3e-07 58.9 45 57.8
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.3e-07 58.9 45 57.8
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.9e-07 57.8 38 71.1
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 5.0e-07 57.0 34 76.5
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.0e-07 57.0 32 81.2
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 5.0e-07 57.0 38 71.1
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.9e-06 55.1 35 74.3
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 4.2e-06 53.9 43 60.5


User provided reference genes

Program Settings