Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 5.8e-180 635.2 680 100.0
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 5.0e-147 525.8 558 91.0
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 7.0e-141 505.4 555 84.5
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 2.9e-78 297.4 480 67.7
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 6.4e-78 296.2 482 66.2
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 2.1e-76 291.2 436 71.3
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.9e-74 284.6 431 70.5
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 8.1e-73 279.3 262 74.0
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 8.1e-73 279.3 262 74.0
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.4e-72 277.7 430 74.2
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.4e-72 277.7 260 71.9
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 4.0e-72 276.9 259 70.7
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.0e-71 274.6 294 65.6
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.9e-70 270.8 470 56.4
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.9e-69 268.1 436 69.3
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 7.1e-69 266.2 430 54.9
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 7.1e-69 266.2 309 62.5
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 2.1e-68 264.6 430 74.0
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 4.6e-68 263.5 433 67.9
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 7.9e-68 262.7 432 65.7
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 7.9e-68 262.7 431 48.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 7.9e-68 262.7 255 71.4
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-67 261.9 259 69.9
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-67 261.9 259 69.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.0e-67 260.8 430 67.9
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 3.9e-67 260.4 473 56.9
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 5.1e-67 260.0 277 68.2
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.5e-66 258.5 294 61.2
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.9e-66 258.1 427 54.3
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.5e-66 257.7 422 64.7
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 4.3e-66 256.9 298 61.7
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 4.3e-66 256.9 430 72.1
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.3e-66 256.9 262 68.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.3e-66 256.9 262 68.3
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 7.4e-66 256.1 302 61.6
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.3e-65 255.4 262 67.9
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-65 255.4 259 68.3
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.6e-65 255.0 430 62.1
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.6e-65 255.0 427 56.4
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.1e-65 254.6 408 76.5
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 3.7e-65 253.8 260 67.3
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.8e-64 251.5 260 66.2
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.1e-64 250.8 255 67.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 5.3e-64 250.0 270 64.8
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.3e-64 250.0 270 64.8
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 5.3e-64 250.0 427 58.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.2e-62 244.6 308 58.4
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.9e-62 244.2 430 37.9
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 6.4e-62 243.0 259 66.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.4e-61 241.9 254 69.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.1e-60 238.0 461 43.6
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.1e-58 232.3 425 59.8
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 3.3e-58 230.7 259 62.5
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 4.3e-58 230.3 428 62.4
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 5.6e-58 229.9 441 59.6
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.3e-57 228.8 386 69.4
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.1e-56 225.7 433 64.4
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.4e-56 225.3 479 52.6
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.8e-56 224.9 257 63.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 5.3e-56 223.4 386 52.1
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.5e-55 221.9 262 64.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 8.4e-54 216.1 278 59.7
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.2e-53 214.2 386 57.0
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 5.5e-53 213.4 442 66.3
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 2.1e-52 211.5 465 63.9
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 7.9e-52 209.5 253 62.1
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.0e-51 209.1 447 58.6
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 6.7e-51 206.5 260 61.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 6.7e-51 206.5 260 61.5
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.1e-50 205.7 415 44.1
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.5e-50 205.3 260 62.3
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.5e-50 204.5 260 60.8
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.6e-49 201.8 260 60.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.6e-49 201.8 260 60.8
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.2e-49 201.4 387 63.8
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 2.8e-49 201.1 260 61.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 3.7e-49 200.7 260 61.2
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 6.3e-49 199.9 278 57.6
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.4e-48 198.7 260 59.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 3.1e-48 197.6 278 58.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.0e-47 194.9 400 54.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 5.9e-47 193.4 228 66.2
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 8.5e-46 189.5 469 54.6
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.1e-44 184.9 300 54.7
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.8e-43 181.8 216 67.1
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 6.7e-43 179.9 215 65.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.7e-43 179.9 387 72.4
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.1e-42 179.1 387 72.4
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.1e-40 170.6 217 64.1
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.2e-39 169.1 218 65.6
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 2.9e-38 164.5 222 62.2
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-37 162.2 222 62.2
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 3.2e-37 161.0 152 54.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-37 160.6 222 61.7
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.7e-36 157.9 146 54.8
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.6e-34 151.4 255 56.5
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 5.9e-31 140.2 256 50.8
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 2.8e-25 121.3 262 49.6
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 2.9e-22 111.3 85 64.7
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.5e-21 107.1 224 68.8
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 8.0e-20 103.2 408 27.7
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 4.8e-17 94.0 233 47.2
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 8.3e-17 93.2 118 91.5
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 5.9e-15 87.0 67 67.2
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 5.9e-15 87.0 55 80.0
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.2e-14 85.1 141 35.5
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.5e-14 83.2 53 71.7
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 3.2e-13 81.3 325 46.8
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.1e-12 78.6 413 24.5
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.7e-12 78.2 59 67.8
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.7e-12 78.2 59 67.8
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.3e-11 75.1 217 28.6
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 2.6e-10 71.6 48 72.9
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.7e-09 68.9 70 51.4
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 4.1e-08 64.3 41 75.6
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 9.1e-08 63.2 55 54.5
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.7e-07 61.6 236 25.8


User provided reference genes

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