Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.5e-88 329.7 189 100.0
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.4e-35 152.9 154 49.4
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 5.6e-16 88.6 152 34.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.7e-15 85.9 162 34.6
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.1e-14 84.3 152 33.6
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 6.9e-14 81.6 152 32.2
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.0e-14 81.3 152 32.2
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.2e-13 80.9 154 33.1
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 2.0e-13 80.1 152 32.9
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 2.0e-13 80.1 153 32.0
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.0e-13 80.1 153 32.0
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.0e-13 80.1 153 32.0
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.0e-13 80.1 152 32.2
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 2.6e-13 79.7 152 32.9
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.6e-13 79.7 156 32.1
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.6e-13 79.7 153 32.0
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.6e-13 79.7 156 31.4
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 2.6e-13 79.7 153 32.7
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.6e-13 79.7 156 32.1
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 3.4e-13 79.3 157 34.4
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 3.4e-13 79.3 152 31.6
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.5e-13 79.0 152 30.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.5e-13 79.0 153 32.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.5e-13 79.0 152 32.2
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.5e-13 79.0 152 32.2
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 5.8e-13 78.6 152 31.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 5.8e-13 78.6 152 32.9
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 7.6e-13 78.2 156 31.4
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 7.6e-13 78.2 152 31.6
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.0e-12 77.8 153 32.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.0e-12 77.8 152 33.6
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.0e-12 77.8 153 31.4
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.0e-12 77.8 152 31.6
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.0e-12 77.8 155 32.9
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.0e-12 77.8 157 32.5
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.0e-12 77.8 157 32.5
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.0e-12 77.8 153 30.7
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.3e-12 77.4 153 32.0
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.3e-12 77.4 153 31.4
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.7e-12 77.0 157 32.5
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.7e-12 77.0 155 34.2
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 2.2e-12 76.6 153 31.4
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.2e-12 76.6 153 32.0
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 2.2e-12 76.6 156 32.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.2e-12 76.6 153 30.7
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.2e-12 76.6 153 29.4
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.9e-12 76.3 160 32.5
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.9e-12 76.3 156 32.7
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 2.9e-12 76.3 155 32.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.9e-12 76.3 160 32.5
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 4.9e-12 75.5 152 32.9
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.9e-12 75.5 157 31.8
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 4.9e-12 75.5 153 33.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 6.5e-12 75.1 152 31.6
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.5e-12 75.1 152 30.3
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 6.5e-12 75.1 153 31.4
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 6.5e-12 75.1 154 30.5
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 6.5e-12 75.1 152 32.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 8.4e-12 74.7 152 32.9
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.4e-12 74.7 156 31.4
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.1e-11 74.3 153 32.0
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.1e-11 74.3 156 32.1
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 1.1e-11 74.3 155 31.6
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.4e-11 73.9 153 30.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.4e-11 73.9 155 31.6
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.4e-11 73.9 145 35.2
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 1.4e-11 73.9 153 30.1
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.4e-11 73.9 145 34.5
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.4e-11 73.9 154 29.2
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.4e-11 73.9 154 29.2
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.4e-11 73.9 161 31.1
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.9e-11 73.6 150 31.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.9e-11 73.6 154 29.2
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.9e-11 73.6 160 31.9
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.5e-11 73.2 153 30.7
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.2e-11 72.8 152 30.9
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.2e-11 72.4 152 29.6
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 4.2e-11 72.4 154 31.8
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.2e-11 72.4 152 30.9
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.2e-11 72.4 152 30.9
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 4.2e-11 72.4 160 31.2
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 5.5e-11 72.0 156 31.4
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.5e-11 72.0 152 30.9
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.1e-11 71.6 156 30.1
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 9.3e-11 71.2 153 32.0
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 9.3e-11 71.2 153 30.1
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 9.3e-11 71.2 156 30.8
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 9.3e-11 71.2 153 30.7
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 9.3e-11 71.2 155 30.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.2e-10 70.9 152 30.9
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.2e-10 70.9 152 30.3
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.2e-10 70.9 92 37.0
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.6e-10 70.5 152 31.6
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.1e-10 70.1 156 30.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-10 69.7 154 30.5
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 3.5e-10 69.3 157 32.5
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 3.5e-10 69.3 161 29.8
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 4.6e-10 68.9 152 29.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 6.1e-10 68.6 155 29.0
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 7.9e-10 68.2 94 38.3
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 7.9e-10 68.2 161 28.6
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.0e-09 67.8 158 27.8
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.3e-09 67.4 155 30.3
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.8e-09 67.0 153 30.7
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.3e-09 66.6 155 29.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.7e-09 65.1 150 31.3
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 6.7e-09 65.1 156 30.1
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-08 64.3 154 32.5
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-08 63.5 161 27.3
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.9e-08 63.5 96 36.5
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 2.5e-08 63.2 153 28.8
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 7.4e-08 61.6 153 28.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.7e-08 61.2 158 27.2
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.8e-07 59.7 164 26.2
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-06 57.4 167 26.9
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-06 57.4 152 30.3
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.4e-06 57.4 152 30.9
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.1e-06 55.8 86 33.7


User provided reference genes

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