Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 9.8e-175 617.1 325 100.0
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.4e-58 229.6 298 47.7
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 3.1e-51 206.8 288 44.8
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.0e-51 206.5 312 42.0
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.0e-51 206.5 307 41.7
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 6.8e-51 205.7 303 42.6
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.7e-49 201.1 307 42.0
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.9e-48 197.6 307 41.0
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.2e-48 196.8 295 42.4
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 4.1e-48 196.4 307 40.4
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 5.4e-48 196.1 298 41.3
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 7.1e-48 195.7 305 41.3
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 9.2e-48 195.3 308 41.9
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-47 194.9 303 41.6
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.2e-47 194.9 303 41.6
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.2e-47 194.9 303 41.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.2e-47 194.9 305 40.7
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.6e-47 194.5 303 41.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-47 194.1 303 41.6
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-47 194.1 303 41.9
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.1e-47 194.1 303 41.6
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.1e-47 194.1 252 44.4
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 2.7e-47 193.7 285 42.8
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.7e-47 193.7 301 40.9
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.5e-47 193.4 308 41.2
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 3.5e-47 193.4 297 40.1
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 6.0e-47 192.6 303 41.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 6.0e-47 192.6 303 40.9
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 6.0e-47 192.6 303 41.3
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 7.8e-47 192.2 292 43.2
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 7.8e-47 192.2 303 41.3
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.3e-46 191.4 311 39.9
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.7e-46 191.0 306 41.2
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 3.9e-46 189.9 309 39.8
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 5.1e-46 189.5 309 39.2
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.1e-46 189.5 311 39.5
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 5.1e-46 189.5 312 39.4
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 6.6e-46 189.1 311 40.5
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.6e-46 189.1 311 38.9
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.1e-45 188.3 310 39.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.9e-45 187.6 304 39.5
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.9e-45 187.6 300 41.3
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 2.5e-45 187.2 310 38.4
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.5e-45 187.2 301 40.9
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.3e-45 186.8 308 40.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 3.3e-45 186.8 310 40.3
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 3.3e-45 186.8 309 39.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 4.3e-45 186.4 310 40.3
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 5.6e-45 186.0 302 40.4
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 7.3e-45 185.7 308 40.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 7.3e-45 185.7 315 40.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 7.3e-45 185.7 300 40.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 9.6e-45 185.3 313 41.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 9.6e-45 185.3 311 40.8
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.6e-45 185.3 306 40.5
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 9.6e-45 185.3 305 40.0
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 9.6e-45 185.3 303 40.6
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-44 184.9 298 40.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.2e-44 184.9 303 39.9
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.1e-44 184.1 301 39.2
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.1e-44 184.1 298 40.3
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-44 184.1 298 40.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-44 184.1 298 40.3
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.1e-44 184.1 323 39.3
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.8e-44 183.7 303 39.9
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.8e-44 183.7 301 40.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.8e-44 183.7 309 40.1
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-44 183.7 305 39.7
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.6e-44 183.3 310 39.0
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 3.6e-44 183.3 303 39.6
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.7e-44 183.0 301 39.2
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.7e-44 183.0 308 41.6
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.7e-44 183.0 298 40.3
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.7e-44 183.0 306 40.2
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 4.7e-44 183.0 311 38.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.7e-44 183.0 309 40.8
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 6.2e-44 182.6 294 39.5
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 6.2e-44 182.6 309 40.1
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 6.2e-44 182.6 311 38.6
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.1e-44 182.2 305 38.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 8.1e-44 182.2 311 38.9
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.1e-43 181.8 306 39.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.4e-43 181.4 303 38.9
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.4e-43 180.6 295 40.3
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.4e-43 180.6 308 39.9
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.1e-43 180.3 300 39.0
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.1e-43 180.3 313 39.0
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 3.1e-43 180.3 304 39.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 3.1e-43 180.3 299 41.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 3.1e-43 180.3 309 39.5
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 4.0e-43 179.9 305 40.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 4.0e-43 179.9 305 39.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 4.0e-43 179.9 306 38.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.8e-43 179.1 302 39.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 6.8e-43 179.1 275 40.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.9e-43 178.7 308 39.0
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.2e-42 178.3 308 39.6
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.6e-42 177.2 299 38.8
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.6e-42 177.2 307 37.8
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.6e-42 177.2 312 39.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 3.4e-42 176.8 313 38.7
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.4e-42 176.4 303 39.6
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 4.4e-42 176.4 306 37.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 5.8e-42 176.0 308 38.6
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 7.6e-42 175.6 302 39.7
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 7.6e-42 175.6 304 38.5
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.6e-42 175.6 260 43.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 7.6e-42 175.6 293 38.9
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 9.9e-42 175.3 303 39.3
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 9.9e-42 175.3 302 38.1
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.7e-41 174.5 302 38.7
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.9e-41 173.7 308 38.3
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 6.4e-41 172.6 308 38.0
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.2e-40 170.2 320 37.8
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.2e-40 170.2 304 37.8
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 9.3e-40 168.7 272 40.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.2e-39 168.3 309 36.6
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.6e-39 167.9 300 38.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 2.1e-39 167.5 320 38.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.7e-39 167.2 267 40.1
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.5e-39 166.8 319 36.7
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.6e-39 166.4 255 41.6
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.3e-38 164.9 370 34.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.9e-38 163.3 309 36.6
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.5e-37 161.4 303 36.3
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.5e-37 161.4 283 39.6
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.5e-37 161.4 262 40.8
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.9e-37 161.0 330 34.8
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-36 157.5 302 36.8
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.8e-36 157.1 306 36.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.8e-36 156.4 329 37.4
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 8.1e-36 155.6 315 36.5
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.4e-35 154.8 243 41.2
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-35 154.5 231 42.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 5.3e-35 152.9 189 48.7
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.2e-34 151.8 298 34.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.2e-33 147.5 368 31.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-31 141.4 299 34.1
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-31 141.0 148 47.3
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.6e-31 139.8 174 44.3
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.1e-29 135.2 328 32.6
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 9.6e-29 132.1 305 33.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 2.1e-28 131.0 305 31.5
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-28 130.2 129 53.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 4.8e-28 129.8 266 34.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-27 127.9 215 40.0
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.4e-24 116.3 311 32.5
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 4.8e-20 103.2 178 41.0
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.1e-19 100.5 144 43.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.4e-17 92.4 165 38.8
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.1e-16 92.0 79 55.7
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-09 68.6 171 36.8
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.9e-08 64.7 119 42.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.7e-07 60.8 170 35.3


User provided reference genes

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