Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc95.55 Carica papaya HOM05D006247 ORTHO05D007684 2.2e-205 718.8 378 100.0
Atru.chr7.645 Acer truncatum HOM05D006247 ORTHO05D007684 5.3e-122 441.8 358 63.7
Manes.14G152800 Manihot esculenta HOM05D006247 ORTHO05D007684 2.6e-121 439.5 364 62.4
Thecc.09G172600 Theobroma cacao HOM05D006247 ORTHO05D007684 4.2e-119 432.2 357 61.1
TWI34G1331 Tripterygium wilfordii HOM05D006247 ORTHO05D007684 5.4e-119 431.8 359 63.2
Duzib168G0886 Durio zibethinus HOM05D006247 ORTHO05D007684 2.1e-118 429.9 364 61.5
Ciclev10007836m.g Citrus clementina HOM05D006247 ORTHO05D007684 1.3e-117 427.2 357 60.8
Dinv42726 Davidia involucrata HOM05D006247 ORTHO05D007684 1.8e-117 426.8 364 60.7
Dinv43375 Davidia involucrata HOM05D006247 ORTHO05D007684 1.8e-117 426.8 364 60.7
QL02p097643 Quercus lobata HOM05D006247 ORTHO05D007684 1.8e-117 426.8 356 61.8
Gorai.004G100200 Gossypium raimondii HOM05D006247 ORTHO05D007684 1.5e-116 423.7 340 62.9
Potri.006G168900 Populus trichocarpa HOM05D006247 ORTHO05D007684 2.5e-116 422.9 356 62.1
Gohir.D08G094300 Gossypium hirsutum HOM05D006247 ORTHO05D007684 1.6e-115 420.2 340 62.6
COL.COLO4_07069 Corchorus olitorius HOM05D006247 ORTHO05D007684 2.4e-114 416.4 380 58.2
GSVIVG01029207001 Vitis vinifera HOM05D006247 ORTHO05D007684 6.9e-114 414.8 363 59.2
Gohir.A08G084700 Gossypium hirsutum HOM05D006247 ORTHO05D007684 2.0e-113 413.3 340 61.8
Sabra06G0130300 Salix brachista HOM05D006247 ORTHO05D007684 7.6e-113 411.4 351 61.0
CSS0031352 Camellia sinensis var. sinensis HOM05D006247 ORTHO05D007684 2.1e-110 403.3 358 60.9
Glyma.17G063800 Glycine max HOM05D006247 ORTHO05D007684 3.0e-109 399.4 346 60.1
Lalb_Chr12g0199361 Lupinus albus HOM05D006247 ORTHO05D007684 7.4e-108 394.8 346 59.0
TAR383G1025 Trochodendron aralioides HOM05D006247 ORTHO05D007684 1.3e-107 394.0 366 56.3
VMungo1215G1070 Vigna mungo HOM05D006247 ORTHO05D007684 1.6e-107 393.7 353 58.4
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 2.1e-107 393.3 352 58.0
CiPaw.07G192000 Carya illinoinensis HOM05D006247 ORTHO05D007684 2.8e-107 392.9 345 59.4
Oeu025222.1 Olea europaea HOM05D006247 ORTHO05D007684 1.4e-106 390.6 351 57.5
Actinidia04160 Actinidia chinensis HOM05D006247 ORTHO05D007684 1.8e-106 390.2 364 57.7
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 9.0e-106 387.9 350 56.9
THA.LOC104803499 Tarenaya hassleriana HOM05D006247 ORTHO05D007684 2.0e-105 386.7 363 57.3
RcHm_v2.0_Chr4g0402581 Rosa chinensis HOM05D006247 ORTHO05D007684 7.6e-105 384.8 357 57.4
TPR.G5375 Trifolium pratense HOM05D006247 ORTHO05D007684 6.5e-104 381.7 355 55.5
Medtr4g128240 Medicago truncatula HOM05D006247 ORTHO05D007684 1.9e-103 380.2 349 55.6
Prupe.1G086300 Prunus persica HOM05D006247 ORTHO05D007684 2.5e-103 379.8 350 60.6
Cc06_g13290 Coffea canephora HOM05D006247 ORTHO05D007684 3.2e-103 379.4 358 54.7
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 1.6e-102 377.1 349 55.9
CANSAT11G2703 Cannabis sativa HOM05D006247 ORTHO05D007684 1.3e-101 374.0 358 55.0
vmacro13121 Vaccinium macrocarpon HOM05D006247 ORTHO05D007684 1.3e-101 374.0 361 57.1
arahy.Tifrunner.gnm1.ann1.B1Q0FL Arachis hypogaea HOM05D006247 ORTHO05D007684 2.3e-101 373.2 368 53.8
Psat4g012560 Pisum sativum HOM05D006247 ORTHO05D007684 5.1e-101 372.1 350 55.1
Lj4g0017814 Lotus japonicus HOM05D006247 ORTHO05D007684 1.9e-100 370.2 356 54.8
FvH4_4g08310 Fragaria vesca HOM05D006247 ORTHO05D007684 7.4e-100 368.2 356 55.9
Sed0001652 Sechium edule HOM05D006247 ORTHO05D007684 2.8e-99 366.3 360 53.3
ClCG11G012190 Citrullus lanatus HOM05D006247 ORTHO05D007684 1.1e-98 364.4 374 52.9
CsaV3_2G008340 Cucumis sativus L. HOM05D006247 ORTHO05D007684 1.8e-98 363.6 364 52.7
FAN22G0611 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.8e-98 363.6 362 56.1
Solyc02g014520.4 Solanum lycopersicum HOM05D006247 ORTHO05D007684 2.4e-98 363.2 346 56.1
Sopen02g003860 Solanum pennellii HOM05D006247 ORTHO05D007684 2.4e-98 363.2 346 56.1
MELO3C004030.2 Cucumis melo HOM05D006247 ORTHO05D007684 3.1e-98 362.8 363 52.9
Rhsim01G0005100 Rhododendron simsii HOM05D006247 ORTHO05D007684 1.2e-97 360.9 385 54.0
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 2.0e-97 360.1 338 55.6
Hund09028 Selenicereus undatus HOM05D006247 ORTHO05D007684 3.4e-97 359.4 362 52.8
Thhalv10001950m.g Eutrema salsugineum HOM05D006247 ORTHO05D007684 5.9e-97 358.6 336 56.2
Sc18g0007480 Simmondsia chinensis HOM05D006247 ORTHO05D007684 5.9e-97 358.6 361 52.1
PSO170G0820 Papaver somniferum HOM05D006247 ORTHO05D007684 3.8e-96 355.9 338 55.6
AUR62033213 Chenopodium quinoa HOM05D006247 ORTHO05D007684 5.0e-96 355.5 364 52.5
BolC7t40784H Brassica oleracea HOM05D006247 ORTHO05D007684 6.5e-96 355.1 336 54.8
AUR62021296 Chenopodium quinoa HOM05D006247 ORTHO05D007684 6.5e-96 355.1 364 52.7
Migut.K00244 Erythranthe guttata HOM05D006247 ORTHO05D007684 6.5e-96 355.1 343 54.2
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 6.5e-96 355.1 340 53.8
EL10Ac4g10218 Beta vulgaris HOM05D006247 ORTHO05D007684 8.5e-96 354.8 348 53.4
AL3G53100 Arabidopsis lyrata HOM05D006247 ORTHO05D007684 1.1e-95 354.4 336 55.7
EL10Ac4g10223 Beta vulgaris HOM05D006247 ORTHO05D007684 1.1e-95 354.4 348 53.4
AT2G18850 Arabidopsis thaliana HOM05D006247 ORTHO05D007684 1.4e-95 354.0 336 55.7
PSO017G3786 Papaver somniferum HOM05D006247 ORTHO05D007684 1.9e-95 353.6 338 54.7
Sp3g32310 Schrenkiella parvula HOM05D006247 ORTHO05D007684 1.9e-95 353.6 336 55.1
BcaB03g16669 Brassica carinata HOM05D006247 ORTHO05D007684 2.5e-95 353.2 336 54.5
A07p01840 Brassica napus HOM05D006247 ORTHO05D007684 2.5e-95 353.2 336 54.5
C07p03920 Brassica napus HOM05D006247 ORTHO05D007684 3.2e-95 352.8 336 54.2
BraA07t27984Z Brassica rapa HOM05D006247 ORTHO05D007684 3.2e-95 352.8 336 54.5
BcaC06g36474 Brassica carinata HOM05D006247 ORTHO05D007684 5.5e-95 352.1 336 54.5
Aa31LG8G15940 Aethionema arabicum HOM05D006247 ORTHO05D007684 7.2e-95 351.7 335 56.4
EL10Ac8g18280 Beta vulgaris HOM05D006247 ORTHO05D007684 9.3e-95 351.3 370 51.6
Nn2g12713 Nelumbo nucifera HOM05D006247 ORTHO05D007684 9.3e-95 351.3 344 53.8
Rhsim01G0005000 Rhododendron simsii HOM05D006247 ORTHO05D007684 9.3e-95 351.3 327 57.2
Aqoxy7G02323 Aquilegia oxysepala HOM05D006247 ORTHO05D007684 1.6e-94 350.5 351 51.0
ECA234G4502 Erigeron canadensis HOM05D006247 ORTHO05D007684 1.0e-93 347.8 347 54.5
Carub.0003s3308 Capsella rubella HOM05D006247 ORTHO05D007684 9.7e-92 341.3 336 53.6
SalBow1G0102 Salvia bowleyana HOM05D006247 ORTHO05D007684 1.6e-91 340.5 348 52.3
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.4e-90 337.4 343 51.9
Eucgr.C02305 Eucalyptus grandis HOM05D006247 ORTHO05D007684 6.9e-90 335.1 292 58.6
CARHR109410 Cardamine hirsuta HOM05D006247 ORTHO05D007684 2.2e-88 330.1 336 54.2
Lsat_1_v5_gn_5_84660 Lactuca sativa HOM05D006247 ORTHO05D007684 2.5e-87 326.6 346 51.7
SGA_v2.0_scaffold12G06066 Striga asiatica HOM05D006247 ORTHO05D007684 4.2e-87 325.9 330 50.9
AUR62040315 Chenopodium quinoa HOM05D006247 ORTHO05D007684 1.4e-85 320.9 317 53.9
MBI14_g17363_MAGBIO Magnolia biondii HOM05D006247 ORTHO05D007684 5.1e-85 318.9 331 48.6
ATR0580G346 Amborella trichopoda HOM05D006247 ORTHO05D007684 6.7e-85 318.5 345 48.7
SHI12522 Sapria himalayana HOM05D006247 ORTHO05D007684 1.0e-80 304.7 275 57.1
Ah.09g229830 Amaranthus hybridus HOM05D006247 ORTHO05D007684 2.9e-80 303.1 339 49.0
FAN12G4057 Fragaria x ananassa HOM05D006247 ORTHO05D007684 2.7e-78 296.6 329 51.1
Os08g0244400 Oryza sativa ssp. japonica HOM05D006247 ORTHO05D007684 1.1e-76 291.2 333 47.7
FAN07G1589 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.7e-75 287.3 320 50.6
Zm00001eb414720 Zea mays HOM05D006247 ORTHO05D007684 9.1e-74 281.6 345 43.8
HPP92_015229 Vanilla planifolia HOM05D006247 ORTHO05D007684 4.5e-73 279.3 351 43.6
Lj9A685T58 Lonicera japonica HOM05D006247 ORTHO05D007684 1.0e-72 278.1 281 54.8
MD16G1258400 Malus domestica HOM05D006247 ORTHO05D007684 1.8e-69 267.3 273 54.6
CDE05G3038 Ceratophyllum demersum HOM05D006247 ORTHO05D007684 3.0e-69 266.5 263 49.8
FAN17G2058 Fragaria x ananassa HOM05D006247 ORTHO05D007684 3.3e-68 263.1 441 38.8
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 6.8e-53 212.2 330 39.1
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 2.9e-48 196.8 196 50.0
TAR383G0012 Trochodendron aralioides HOM05D006247 ORTHO05D007684 2.5e-39 167.2 144 59.0
Peaxi162Scf00113g01819 Petunia axillaris HOM05D006247 ORTHO05D007684 1.4e-37 161.4 204 47.1
MD13G1255300 Malus domestica HOM05D006247 ORTHO05D007684 8.9e-37 158.7 248 42.3
CBR_g47154 Chara braunii HOM05D006247 ORTHO05D007684 3.4e-36 156.8 383 29.5
Glyma.13G096300 Glycine max HOM05D006247 ORTHO05D007684 4.6e-33 146.4 151 54.3
Nitab4.5_0004255g0020 Nicotiana tabacum HOM05D006247 ORTHO05D007684 1.1e-31 141.7 210 43.3
Nitab4.5_0000018g0090 Nicotiana tabacum HOM05D006247 ORTHO05D007684 5.6e-31 139.4 204 43.6
arahy.Tifrunner.gnm1.ann1.M2FXAD Arachis hypogaea HOM05D006247 ORTHO05D007684 4.6e-25 119.8 103 57.3
Nitab4.5_0000018g0080 Nicotiana tabacum HOM05D006247 ORTHO05D007684 1.8e-21 107.8 70 67.1
Nitab4.5_0019045g0010 Nicotiana tabacum HOM05D006247 ORTHO05D007684 2.6e-20 104.0 70 65.7
Peaxi162Scf00113g01818 Petunia axillaris HOM05D006247 ORTHO05D007684 1.3e-19 101.7 74 59.5
MD16G1258300 Malus domestica HOM05D006247 ORTHO05D007684 4.9e-19 99.8 71 62.0
Haze_22104 Corylus avellana HOM05D006247 ORTHO05D007684 1.2e-17 95.1 69 62.3
Cre13.g573000 Chlamydomonas reinhardtii HOM05D006247 ORTHO05D007684 3.3e-15 87.0 178 29.8
SEGI_27794 Sequoiadendron giganteum HOM05D006247 ORTHO05D007684 4.6e-09 66.6 179 27.9
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 6.0e-09 66.2 176 25.6
Hma1.2p1_3184F.1_g333730 Hydrangea macrophylla HOM05D006247 ORTHO05D007684 7.8e-09 65.9 39 82.1
Cfa008936 Carpinus fangiana HOM05D005456 ORTHO05D006805 5.1e-08 63.2 217 24.4
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 5.1e-08 63.2 173 23.1
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 5.1e-08 63.2 245 22.0
PGR119G2207 Punica granatum HOM05D005456 ORTHO05D006805 8.7e-08 62.4 181 22.7
Manes.01G033300 Manihot esculenta HOM05D005456 ORTHO05D006805 1.9e-07 61.2 187 24.6
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 1.9e-07 61.2 176 24.4
SMO172G0104 Selaginella moellendorffii HOM05D006247 ORTHO05D007684 1.9e-07 61.2 177 29.9
CDE07G0572 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 3.3e-07 60.5 176 22.7
CDE04G2362 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 5.6e-07 59.7 128 24.2
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 7.3e-07 59.3 127 25.2
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 7.3e-07 59.3 156 26.3
BraA09t41618Z Brassica rapa HOM05D005456 ORTHO05D006805 7.3e-07 59.3 156 26.3
Duzib251G0039 Durio zibethinus HOM05D005456 ORTHO05D006805 7.3e-07 59.3 181 24.3
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 9.6e-07 58.9 176 23.9
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 9.6e-07 58.9 176 23.9
Potri.008G090500 Populus trichocarpa HOM05D005456 ORTHO05D006805 9.6e-07 58.9 132 25.8
CBR_g35035 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-06 58.5 98 32.7
BolC8t52161H Brassica oleracea HOM05D005456 ORTHO05D006805 1.6e-06 58.2 156 26.3
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 1.6e-06 58.2 217 24.4
TWI79G0373 Tripterygium wilfordii HOM05D005456 ORTHO05D006805 1.6e-06 58.2 179 22.9
C08p46110 Brassica napus HOM05D005456 ORTHO05D006805 2.1e-06 57.8 156 26.3
FAN22G2029 Fragaria x ananassa HOM05D005456 ORTHO05D006805 3.6e-06 57.0 174 24.1
Prupe.1G278900 Prunus persica HOM05D005456 ORTHO05D006805 3.6e-06 57.0 176 23.3
Haze_11965 Corylus avellana HOM05D005456 ORTHO05D006805 4.8e-06 56.6 127 26.0
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 6.2e-06 56.2 132 24.2
Aa31LG1G1000 Aethionema arabicum HOM05D005456 ORTHO05D006805 8.1e-06 55.8 195 25.6
Hma1.2p1_0354F.1_g133890 Hydrangea macrophylla HOM05D005456 ORTHO05D006805 8.1e-06 55.8 132 25.8


User provided reference genes

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