Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.5e-242 840.1 428 100.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.3e-174 615.9 413 74.6
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.0e-166 590.5 414 73.4
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 3.9e-166 588.6 413 71.9
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.1e-163 580.5 413 70.0
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.1e-163 580.5 413 70.2
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.4e-163 579.3 413 70.9
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.3e-161 573.5 416 69.5
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 2.2e-161 572.8 416 69.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.9e-160 569.7 413 69.2
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.9e-160 569.7 413 70.7
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 2.5e-160 569.3 413 69.7
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.0e-158 563.9 415 67.7
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.0e-158 562.4 414 69.3
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.1e-157 560.5 413 69.0
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.1e-157 560.5 414 69.3
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.6e-157 559.3 413 69.7
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.7e-157 558.1 414 68.8
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.4e-157 557.8 413 69.0
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 7.4e-157 557.8 415 67.7
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.7e-156 555.4 415 67.2
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 6.3e-156 554.7 415 67.5
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.4e-155 553.5 414 68.6
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.2e-154 550.4 424 66.5
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 7.7e-154 547.7 414 67.4
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 5.0e-153 545.0 413 67.8
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.8e-150 536.6 421 64.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.8e-150 534.3 427 63.7
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 2.0e-149 533.1 401 67.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 7.5e-149 531.2 413 65.1
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.1e-147 527.3 413 65.4
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.8e-147 526.6 413 66.3
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 3.1e-147 525.8 387 69.8
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.5e-146 522.3 427 62.8
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 3.8e-145 518.8 413 63.7
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 6.5e-145 518.1 413 63.9
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.1e-144 517.3 413 63.4
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 3.2e-144 515.8 414 63.8
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 3.2e-144 515.8 413 63.9
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 3.6e-143 512.3 413 64.2
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.6e-143 512.3 418 62.7
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 6.1e-143 511.5 413 63.4
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.0e-142 510.8 413 64.4
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.8e-142 510.0 413 63.0
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 5.2e-142 508.4 414 63.0
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 4.4e-141 505.4 459 58.0
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 5.7e-141 505.0 414 64.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 4.8e-140 501.9 415 63.1
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 5.4e-139 498.4 419 62.5
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.6e-138 496.9 413 63.9
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.0e-137 494.2 420 60.2
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.7e-137 493.4 413 62.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.3e-136 489.2 422 60.0
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 7.2e-136 488.0 403 63.0
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 3.6e-135 485.7 419 62.3
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 6.1e-135 485.0 420 59.0
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 4.0e-134 482.3 413 62.2
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.2e-134 481.9 413 62.0
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 2.0e-133 479.9 415 60.5
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 2.8e-132 476.1 474 56.8
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.8e-131 473.4 429 59.7
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 4.1e-131 472.2 429 59.2
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.1e-131 472.2 414 59.2
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 4.1e-131 472.2 414 58.9
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.4e-131 471.9 413 61.3
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 4.3e-128 462.2 419 58.7
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 4.0e-126 455.7 419 60.4
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.0e-126 455.7 404 57.9
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.8e-125 451.8 418 57.7
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 4.9e-124 448.7 415 57.6
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 4.1e-123 445.7 414 56.5
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 4.1e-123 445.7 348 64.4
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.0e-122 443.4 414 58.0
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.7e-121 440.3 413 57.1
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.7e-121 440.3 415 56.9
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 6.6e-121 438.3 413 56.7
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 3.3e-120 436.0 415 55.2
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.8e-119 433.0 422 55.5
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.0e-117 426.8 413 55.9
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 3.4e-117 426.0 413 54.0
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.4e-117 426.0 422 53.3
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 7.5e-117 424.9 413 55.0
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.9e-116 422.2 414 56.0
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.5e-114 416.0 424 54.0
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 5.1e-113 412.1 417 53.7
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 5.1e-113 412.1 424 54.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 5.1e-113 412.1 424 54.0
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 5.1e-113 412.1 417 53.7
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.1e-110 404.4 414 53.9
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 6.8e-110 401.7 404 54.5
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.0e-109 400.2 443 52.1
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 3.4e-109 399.4 427 51.3
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 6.4e-108 395.2 438 49.3
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.7e-106 389.8 414 52.7
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 4.6e-106 389.0 413 52.1
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 4.7e-103 379.0 421 49.6
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 5.2e-102 375.6 441 48.8
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.2e-101 374.4 428 50.5
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.4e-101 372.9 414 50.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.8e-100 369.4 263 72.6
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 4.2e-99 365.9 346 56.4
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 2.1e-98 363.6 414 50.7
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 3.5e-98 362.8 342 56.1
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.7e-97 360.5 420 50.2
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.5e-93 347.4 384 51.3
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 2.9e-92 343.2 221 77.4
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 4.2e-91 339.3 319 57.1
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 8.7e-89 331.6 415 47.7
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 3.3e-88 329.7 377 50.4
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 5.6e-88 328.9 416 48.6
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 2.4e-86 323.6 419 46.1
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.9e-85 318.2 278 57.6
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.9e-83 313.9 442 44.8
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.0e-82 308.9 290 54.1
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.0e-81 308.1 367 49.0
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.4e-78 297.7 376 47.1
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.8e-76 289.7 413 42.4
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.2e-75 286.6 377 44.3
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 2.4e-70 270.4 436 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 9.3e-67 258.5 417 36.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.5e-64 251.1 367 42.0
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 6.1e-58 229.2 421 35.9
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 4.8e-47 193.0 197 53.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.8e-44 183.3 167 58.1
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 4.8e-39 166.4 175 50.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 4.5e-37 159.8 167 52.1
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 1.0e-33 148.7 236 39.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.7e-31 141.4 224 38.4
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 4.8e-31 139.8 71 100.0
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.3e-28 131.7 97 67.0
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 9.1e-22 109.0 177 37.9
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-18 98.6 68 69.1
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-18 98.6 69 71.0
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 8.9e-17 92.4 103 51.5
Gohir.D07G167350 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.5e-16 91.7 86 53.5
Gohir.A01G114950 Gossypium hirsutum HOM05D005024 ORTHO05D029835 7.0e-14 82.8 85 50.6
Gohir.A01G201250 Gossypium hirsutum HOM05D005024 ORTHO05D029835 7.0e-14 82.8 85 50.6
Gorai.003G122400 Gossypium raimondii HOM05D005024 ORTHO05D029835 7.0e-14 82.8 85 50.6
Gohir.D07G161533 Gossypium hirsutum HOM05D005024 ORTHO05D029835 2.0e-13 81.3 85 50.6
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 1.7e-12 78.2 94 40.4


User provided reference genes

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