Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.2e-53 213.0 114 100.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.2e-46 188.3 114 87.7
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.2e-46 188.3 114 87.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 87.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 86.0
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.6e-45 184.5 114 86.8
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.0e-44 183.3 110 89.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 83.3
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 82.5
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 82.5
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 82.5
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 82.5
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 82.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 80.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 5.6e-43 177.6 113 83.2
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 80.7
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 78.9
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 79.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 79.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 79.8
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 81.2
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 81.7
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 78.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 79.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.1e-41 173.3 110 82.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 78.9
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 82.1
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 81.2
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 78.6
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 78.6
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 81.2
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 80.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 79.8
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 77.2
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 79.8
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 79.1
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 79.8
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 78.9
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 79.5
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.9
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 77.2
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 78.9
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 78.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 78.6
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 77.2
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 77.2
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 80.7
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.2e-40 169.9 115 80.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 78.1
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.6e-40 168.7 115 80.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 79.8
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.4e-40 168.3 115 80.0
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 4.4e-40 167.9 115 79.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 77.2
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 77.2
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 80.4
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 9.8e-40 166.8 112 75.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 76.3
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 74.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 74.6
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 74.6
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 75.0
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-39 165.6 115 77.4
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 75.4
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 75.4
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 78.9
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 78.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 78.9
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 78.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 75.4
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 110 79.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 73.7
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 75.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 75.4
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.9e-38 162.5 113 75.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.4e-38 162.2 104 81.7
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.4e-38 162.2 110 79.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.4e-38 162.2 108 76.9
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.4e-38 162.2 115 76.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 4.1e-38 161.4 112 74.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 74.6
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 74.6
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 74.6
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 9.2e-38 160.2 106 77.4
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 9.2e-38 160.2 113 75.2
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 74.6
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 73.7
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 75.4
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 72.3
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.7e-37 158.7 114 73.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.7e-37 158.7 142 64.1
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.5e-37 158.3 110 76.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.0e-36 155.2 146 63.7
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 8.6e-36 153.7 145 60.7
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.5e-35 152.9 114 71.9
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 3.3e-35 151.8 104 76.9
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.2e-34 149.8 108 73.1
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-34 149.8 114 70.2
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.8e-34 148.7 114 71.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.1e-33 145.2 91 84.6
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.1e-33 145.2 112 69.6
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.4e-32 141.4 84 85.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 5.8e-32 141.0 81 88.9
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 3.8e-31 138.3 81 87.7
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 4.9e-31 137.9 100 74.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 110 66.4
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.4e-30 135.6 79 86.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.4e-30 134.4 94 77.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-29 133.3 83 81.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-29 133.3 83 81.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.1e-29 132.5 109 65.1
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 77 87.0
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 6.0e-29 131.0 107 63.6
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 7.8e-29 130.6 77 89.6
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 2.8e-26 122.1 77 81.8
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-25 119.8 72 86.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-23 113.2 65 89.2
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.3e-23 113.2 78 71.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.2e-23 112.5 112 56.2
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 5.4e-22 107.8 69 79.7
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-22 107.5 77 71.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-20 103.2 77 68.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.7e-20 102.8 114 53.5
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 3.0e-20 102.1 104 56.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 8.7e-20 100.5 107 49.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.8e-18 94.7 109 50.5
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.8e-17 92.8 63 71.4
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.1e-17 92.0 100 57.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.3e-17 91.3 111 46.8
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 5.8e-16 87.8 62 71.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.4e-14 83.2 80 52.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.3e-14 80.5 57 77.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.1e-13 79.3 106 46.2
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 2.7e-13 79.0 55 76.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 6.0e-13 77.8 44 86.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 6.0e-13 77.8 95 50.5
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 60 68.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-12 77.0 51 80.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.8e-12 76.3 104 44.2
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.3e-12 75.9 44 84.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-12 75.5 50 78.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 5.1e-12 74.7 104 45.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.7e-12 74.3 45 84.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 6.7e-12 74.3 44 81.8
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 8.7e-12 73.9 92 47.8
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-11 73.6 51 66.7
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.5e-11 72.4 51 76.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-11 70.5 92 53.3
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 9.6e-11 70.5 98 40.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.6e-10 69.7 99 49.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 6.9e-09 64.3 95 48.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.6e-08 60.8 59 49.2


User provided reference genes

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