Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.203 Carica papaya HOM05D000404 ORTHO05D005114 1.4e-47 192.6 95 100.0
MBI18_g28069_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005114 2.8e-11 72.0 58 53.4
DCAR_021196 Daucus carota HOM05D000404 ORTHO05D005114 2.3e-10 68.9 52 53.8
Glyma.13G305200 Glycine max HOM05D000404 ORTHO05D005114 2.3e-10 68.9 47 61.7
Glyma.13G305300 Glycine max HOM05D000404 ORTHO05D005114 2.3e-10 68.9 47 59.6
CANSAT64G1858 Cannabis sativa HOM05D000404 ORTHO05D005114 4.0e-10 68.2 47 59.6
Medtr2g089030 Medicago truncatula HOM05D000404 ORTHO05D005114 4.0e-10 68.2 47 59.6
Glyma.12G197100 Glycine max HOM05D000404 ORTHO05D005114 5.2e-10 67.8 47 59.6
Prupe.3G221800 Prunus persica HOM05D000404 ORTHO05D005114 5.2e-10 67.8 56 55.4
TPR.G19046 Trifolium pratense HOM05D000404 ORTHO05D005114 5.2e-10 67.8 47 61.7
TPR.G30795 Trifolium pratense HOM05D000404 ORTHO05D005114 5.2e-10 67.8 47 63.8
Ca_01567_v3 Cicer arietinum L. HOM05D000404 ORTHO05D000251 6.8e-10 67.4 47 59.6
arahy.Tifrunner.gnm1.ann1.Y6Z03A Arachis hypogaea HOM05D000404 ORTHO05D005114 8.8e-10 67.0 47 57.4
Lj3g0010624 Lotus japonicus HOM05D000404 ORTHO05D005114 1.2e-09 66.6 56 50.0
Thecc.05G209100 Theobroma cacao HOM05D000404 ORTHO05D005114 1.2e-09 66.6 56 53.6
AT4G15210 Arabidopsis thaliana HOM05D000404 ORTHO05D005114 1.5e-09 66.2 58 50.0
FAN14G2352 Fragaria x ananassa HOM05D000404 ORTHO05D005114 1.5e-09 66.2 47 59.6
Lj1A754T69 Lonicera japonica HOM05D000404 ORTHO05D005114 1.5e-09 66.2 52 53.8
VMungo1127G1501 Vigna mungo HOM05D000404 ORTHO05D005114 1.5e-09 66.2 56 53.6
arahy.Tifrunner.gnm1.ann1.C3I2PC Arachis hypogaea HOM05D000404 ORTHO05D005114 2.0e-09 65.9 47 55.3
Carub.0004s1363 Capsella rubella HOM05D000404 ORTHO05D005114 2.0e-09 65.9 55 50.9
Thhalv10016419m.g Eutrema salsugineum HOM05D000404 ORTHO05D005114 2.0e-09 65.9 55 52.7
Glyma.06G301500 Glycine max HOM05D000404 ORTHO05D005114 2.0e-09 65.9 56 51.8
Glyma.12G102900 Glycine max HOM05D000404 ORTHO05D005114 2.0e-09 65.9 56 51.8
Phvul.011G107700 Phaseolus vulgaris HOM05D000404 ORTHO05D005114 2.0e-09 65.9 56 50.0
Potri.017G040800 Populus trichocarpa HOM05D000404 ORTHO05D005114 2.0e-09 65.9 49 57.1
arahy.Tifrunner.gnm1.ann1.NQ88PQ Arachis hypogaea HOM05D000404 ORTHO05D005114 2.6e-09 65.5 56 51.8
Thhalv10024989m.g Eutrema salsugineum HOM05D000404 ORTHO05D005114 2.6e-09 65.5 56 51.8
Sabra17G0027600 Salix brachista HOM05D000404 ORTHO05D005114 2.6e-09 65.5 49 57.1
Sp7g13420 Schrenkiella parvula HOM05D000404 ORTHO05D005114 2.6e-09 65.5 58 50.0
AL7G40480 Arabidopsis lyrata HOM05D000404 ORTHO05D005114 3.4e-09 65.1 58 48.3
EL10Ac5g11269 Beta vulgaris HOM05D000404 ORTHO05D005114 3.4e-09 65.1 56 48.2
Carub.0007s2675 Capsella rubella HOM05D000404 ORTHO05D005114 3.4e-09 65.1 58 48.3
CARHR221930 Cardamine hirsuta HOM05D000404 ORTHO05D005114 3.4e-09 65.1 58 48.3
Ciclev10014929m.g Citrus clementina HOM05D000404 ORTHO05D005114 3.4e-09 65.1 56 53.6
Psat5g265560 Pisum sativum HOM05D000404 ORTHO05D005114 3.4e-09 65.1 47 59.6
RcHm_v2.0_Chr2g0160291 Rosa chinensis HOM05D000404 ORTHO05D005114 3.4e-09 65.1 47 59.6
AL4G27680 Arabidopsis lyrata HOM05D000404 ORTHO05D005114 4.4e-09 64.7 55 49.1
Cfa014451 Carpinus fangiana HOM05D000404 ORTHO05D005114 4.4e-09 64.7 47 59.6
Haze_12938 Corylus avellana HOM05D000404 ORTHO05D005114 4.4e-09 64.7 47 59.6
Manes.12G078500 Manihot esculenta HOM05D000404 ORTHO05D005114 4.4e-09 64.7 47 61.7
Medtr4g045667 Medicago truncatula HOM05D000404 ORTHO05D005114 4.4e-09 64.7 56 51.8
Oeu011069.1 Olea europaea HOM05D000404 ORTHO05D005114 4.4e-09 64.7 47 57.4
Rhsim04G0057100 Rhododendron simsii HOM05D000404 ORTHO05D005114 4.4e-09 64.7 56 51.8
TAR629G1170 Trochodendron aralioides HOM05D000404 ORTHO05D005114 4.4e-09 64.7 47 59.6
BcaB02g10478 Brassica carinata HOM05D000404 ORTHO05D005114 5.7e-09 64.3 55 49.1
Duzib106G0886 Durio zibethinus HOM05D000404 ORTHO05D005114 5.7e-09 64.3 56 51.8
Duzib106G1423 Durio zibethinus HOM05D000404 ORTHO05D005114 5.7e-09 64.3 56 51.8
Lj1A754T66 Lonicera japonica HOM05D000404 ORTHO05D005114 5.7e-09 64.3 52 51.9
GSVIVG01030642001 Vitis vinifera HOM05D000404 ORTHO05D005114 5.7e-09 64.3 47 59.6
EL10Ac9g22676 Beta vulgaris HOM05D000404 ORTHO05D005114 7.5e-09 63.9 56 46.4
BcaC02g11335 Brassica carinata HOM05D000404 ORTHO05D005114 7.5e-09 63.9 55 49.1
C04p17330 Brassica napus HOM05D000404 ORTHO05D005114 7.5e-09 63.9 55 49.1
BolC4t23284H Brassica oleracea HOM05D000404 ORTHO05D005114 7.5e-09 63.9 55 49.1
BraA05t20249Z Brassica rapa HOM05D000404 ORTHO05D005114 7.5e-09 63.9 55 49.1
CiPaw.03G163800 Carya illinoinensis HOM05D000404 ORTHO05D005114 7.5e-09 63.9 47 59.6
Ca_20675_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005114 9.8e-09 63.5 47 59.6
VMungo1080G0655 Vigna mungo HOM05D000404 ORTHO05D005114 9.8e-09 63.5 47 57.4
Ah.01g003140 Amaranthus hybridus HOM05D000404 ORTHO05D005114 1.3e-08 63.2 56 48.2
A05p13100 Brassica napus HOM05D000404 ORTHO05D005114 1.3e-08 63.2 55 49.1
AUR62015004 Chenopodium quinoa HOM05D000404 ORTHO05D005114 1.3e-08 63.2 56 46.4
FAN05G0611 Fragaria x ananassa HOM05D000404 ORTHO05D005114 1.3e-08 63.2 41 65.9
Lj1C754T6 Lonicera japonica HOM05D000404 ORTHO05D005114 1.3e-08 63.2 61 44.3
Sed0021129 Sechium edule HOM05D000404 ORTHO05D005114 1.3e-08 63.2 47 57.4
AUR62014945 Chenopodium quinoa HOM05D000404 ORTHO05D005114 1.7e-08 62.8 56 46.4
AUR62029196 Chenopodium quinoa HOM05D000404 ORTHO05D005114 1.7e-08 62.8 56 46.4
Psat7g197880 Pisum sativum HOM05D000404 ORTHO05D005114 1.7e-08 62.8 47 57.4
Aa31LG9G2210 Aethionema arabicum HOM05D000404 ORTHO05D005114 2.2e-08 62.4 56 50.0
AUR62029118 Chenopodium quinoa HOM05D000404 ORTHO05D005114 2.2e-08 62.4 56 46.4
CsaV3_7G003840 Cucumis sativus L. HOM05D000404 ORTHO05D005114 2.2e-08 62.4 47 57.4
Gohir.A11G303766 Gossypium hirsutum HOM05D000404 ORTHO05D005114 2.2e-08 62.4 47 55.3
Gohir.D11G319200 Gossypium hirsutum HOM05D000404 ORTHO05D005114 2.2e-08 62.4 47 55.3
Gorai.007G349200 Gossypium raimondii HOM05D000404 ORTHO05D005114 2.2e-08 62.4 47 55.3
MD09G1103800 Malus domestica HOM05D000404 ORTHO05D005114 2.2e-08 62.4 56 50.0
Nn1g03711 Nelumbo nucifera HOM05D000404 ORTHO05D005114 2.2e-08 62.4 49 53.1
PGR042G3951 Punica granatum HOM05D000404 ORTHO05D005114 2.2e-08 62.4 47 55.3
arahy.Tifrunner.gnm1.ann1.0V89VS Arachis hypogaea HOM05D000404 ORTHO05D005114 2.8e-08 62.0 47 57.4
Eucgr.A01734 Eucalyptus grandis HOM05D000404 ORTHO05D005114 2.8e-08 62.0 56 50.0
HanXRQChr17g0563781 Helianthus annuus HOM05D000404 ORTHO05D005114 2.8e-08 62.0 52 50.0
Actinidia30504 Actinidia chinensis HOM05D000404 ORTHO05D005114 3.7e-08 61.6 55 50.9
Ah.01g003240 Amaranthus hybridus HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 46.4
AT2G32290 Arabidopsis thaliana HOM05D000404 ORTHO05D005114 3.7e-08 61.6 55 47.3
EL10Ac9g22880 Beta vulgaris HOM05D000404 ORTHO05D005114 3.7e-08 61.6 53 49.1
BcaC07g37877 Brassica carinata HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 50.0
A08p11690 Brassica napus HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 50.0
BolC8t48275H Brassica oleracea HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 50.0
BraA08t33163Z Brassica rapa HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 50.0
CSS0043460 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005114 3.7e-08 61.6 47 55.3
COL.COLO4_13004 Corchorus olitorius HOM05D000404 ORTHO05D005114 3.7e-08 61.6 47 57.4
Phvul.005G112400 Phaseolus vulgaris HOM05D000404 ORTHO05D005114 3.7e-08 61.6 47 51.1
QL08p034014 Quercus lobata HOM05D000404 ORTHO05D005114 3.7e-08 61.6 47 57.4
Thecc.02G163200 Theobroma cacao HOM05D000404 ORTHO05D005114 3.7e-08 61.6 56 51.8
ECA233G5920 Erigeron canadensis HOM05D000404 ORTHO05D005114 4.9e-08 61.2 52 50.0
Oeu041964.1 Olea europaea HOM05D000404 ORTHO05D005114 4.9e-08 61.2 47 53.2
Sc12g0002430 Simmondsia chinensis HOM05D000404 ORTHO05D005114 4.9e-08 61.2 58 44.8
vmacro09321 Vaccinium macrocarpon HOM05D000404 ORTHO05D005114 4.9e-08 61.2 56 48.2
Zm00001eb323450 Zea mays HOM05D000404 ORTHO05D005114 4.9e-08 61.2 56 51.8
Dinv18539 Davidia involucrata HOM05D000404 ORTHO05D005114 6.3e-08 60.8 47 53.2
Migut.M00386 Erythranthe guttata HOM05D000404 ORTHO05D005114 6.3e-08 60.8 47 53.2
Migut.M00388 Erythranthe guttata HOM05D000404 ORTHO05D005114 6.3e-08 60.8 47 55.3
VMungo1080G0878 Vigna mungo HOM05D000404 ORTHO05D005114 6.3e-08 60.8 47 53.2
CSS0011170 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005114 8.3e-08 60.5 47 55.3
Gohir.A03G163200 Gossypium hirsutum HOM05D000404 ORTHO05D005114 8.3e-08 60.5 47 57.4
Gohir.D02G186600 Gossypium hirsutum HOM05D000404 ORTHO05D005114 8.3e-08 60.5 47 57.4
Gorai.005G208900 Gossypium raimondii HOM05D000404 ORTHO05D005114 8.3e-08 60.5 47 57.4
THA.LOC104800979 Tarenaya hassleriana HOM05D000404 ORTHO05D005114 8.3e-08 60.5 51 54.9
Zm00001eb106420 Zea mays HOM05D000404 ORTHO05D005114 8.3e-08 60.5 47 55.3
Aqoxy4G02126 Aquilegia oxysepala HOM05D000404 ORTHO05D005114 1.1e-07 60.1 47 53.2
MSTRG.14842 Avicennia marina HOM05D000404 ORTHO05D005114 1.1e-07 60.1 56 44.6
Nn1g06960 Nelumbo nucifera HOM05D000404 ORTHO05D005114 1.1e-07 60.1 47 53.2
Sp4g14680 Schrenkiella parvula HOM05D000404 ORTHO05D005114 1.1e-07 60.1 55 47.3
CARHR126100 Cardamine hirsuta HOM05D000404 ORTHO05D005114 1.4e-07 59.7 55 45.5
FAN02G2921 Fragaria x ananassa HOM05D000404 ORTHO05D005114 1.4e-07 59.7 47 55.3
Hma1.2p1_0613F.1_g189360 Hydrangea macrophylla HOM05D000404 ORTHO05D005114 1.4e-07 59.7 56 48.2
Lalb_Chr14g0375631 Lupinus albus HOM05D000404 ORTHO05D005114 1.4e-07 59.7 47 53.2
Peaxi162Scf00007g01343 Petunia axillaris HOM05D000404 ORTHO05D005114 1.4e-07 59.7 47 53.2
PSO541G1039 Papaver somniferum HOM05D000404 ORTHO05D005114 1.8e-07 59.3 47 55.3
Ah.01g012850 Amaranthus hybridus HOM05D000404 ORTHO05D005114 2.4e-07 58.9 58 43.1
ClCG02G001600 Citrullus lanatus HOM05D000404 ORTHO05D005114 2.4e-07 58.9 47 55.3
TAR376G0580 Trochodendron aralioides HOM05D000404 ORTHO05D005114 3.1e-07 58.5 41 63.4
Atru.chr6.3128 Acer truncatum HOM05D000404 ORTHO05D005114 4.1e-07 58.2 47 55.3
ClCG02G001710 Citrullus lanatus HOM05D000404 ORTHO05D005114 4.1e-07 58.2 41 61.0
MD17G1091600 Malus domestica HOM05D000404 ORTHO05D005114 4.1e-07 58.2 56 50.0
TWI36G1237 Tripterygium wilfordii HOM05D000404 ORTHO05D005114 4.1e-07 58.2 47 51.1
Cc05_g06100 Coffea canephora HOM05D000404 ORTHO05D005114 5.4e-07 57.8 47 48.9
Lj3g0015192 Lotus japonicus HOM05D000404 ORTHO05D005114 5.4e-07 57.8 47 53.2
SalBow7G3558 Salvia bowleyana HOM05D000404 ORTHO05D005114 5.4e-07 57.8 63 46.0
Cc00_g19260 Coffea canephora HOM05D000404 ORTHO05D005114 7.0e-07 57.4 47 51.1
Hma1.2p1_0923F.1_g237020 Hydrangea macrophylla HOM05D000404 ORTHO05D005114 7.0e-07 57.4 47 53.2
Lsat_1_v5_gn_8_129860 Lactuca sativa HOM05D000404 ORTHO05D005114 7.0e-07 57.4 61 41.0
Cc05_g06110 Coffea canephora HOM05D000404 ORTHO05D005114 9.2e-07 57.0 47 48.9
Nitab4.5_0002949g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005114 9.2e-07 57.0 47 51.1
CAN.G86.15 Capsicum annuum HOM05D000404 ORTHO05D005114 1.6e-06 56.2 47 51.1
Os07g0543100 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005114 1.6e-06 56.2 57 47.4
Aa31LG5G4240 Aethionema arabicum HOM05D000404 ORTHO05D005114 2.7e-06 55.5 49 42.9
Solyc07g052690.4 Solanum lycopersicum HOM05D000404 ORTHO05D005114 5.9e-06 54.3 47 48.9
Sopen07g026320 Solanum pennellii HOM05D000404 ORTHO05D005114 5.9e-06 54.3 47 48.9


User provided reference genes

Program Settings