Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 6.0e-121 437.6 230 100.0
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 7.2e-106 387.5 216 94.0
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.0e-104 383.6 216 93.5
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 1.4e-104 383.3 216 93.5
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 1.8e-104 382.9 216 91.7
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 3.0e-104 382.1 216 93.5
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 3.9e-104 381.7 216 92.6
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 3.9e-104 381.7 216 93.1
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 8.8e-104 380.6 216 91.7
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-103 380.2 216 93.1
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-103 380.2 216 93.1
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.1e-103 380.2 216 93.1
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 2.5e-103 379.0 216 91.2
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 4.3e-103 378.3 216 92.1
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 4.3e-103 378.3 216 90.7
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 4.3e-103 378.3 216 91.7
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 4.3e-103 378.3 216 92.1
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 5.7e-103 377.9 216 91.2
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 5.7e-103 377.9 216 92.6
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 5.7e-103 377.9 225 90.2
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 5.7e-103 377.9 216 91.7
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.3e-102 376.7 216 89.8
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 1.3e-102 376.7 227 86.3
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 1.3e-102 376.7 216 90.7
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 1.7e-102 376.3 216 91.7
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 1.7e-102 376.3 219 90.0
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 2.2e-102 375.9 216 90.3
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 2.2e-102 375.9 216 90.3
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 2.8e-102 375.6 216 89.8
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 3.7e-102 375.2 216 91.2
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 4.8e-102 374.8 216 90.7
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 6.3e-102 374.4 216 90.7
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 6.3e-102 374.4 216 90.7
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 6.3e-102 374.4 216 90.7
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 8.2e-102 374.0 216 90.3
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 8.2e-102 374.0 227 86.3
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.8e-101 372.9 216 91.7
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 2.4e-101 372.5 216 90.7
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 2.4e-101 372.5 216 91.2
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 3.1e-101 372.1 216 88.9
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 6.9e-101 370.9 216 91.2
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 9.1e-101 370.5 219 88.1
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 9.1e-101 370.5 216 90.7
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.2e-100 370.2 216 91.2
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 1.2e-100 370.2 216 89.4
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 1.2e-100 370.2 216 89.4
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.5e-100 369.8 216 90.3
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 2.0e-100 369.4 216 89.8
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 2.6e-100 369.0 216 90.3
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 2.6e-100 369.0 216 90.3
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 2.6e-100 369.0 216 88.9
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 3.4e-100 368.6 219 88.1
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 3.4e-100 368.6 219 88.1
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 3.4e-100 368.6 219 88.1
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 4.5e-100 368.2 216 88.9
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 4.5e-100 368.2 219 89.0
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 4.5e-100 368.2 216 89.8
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 5.9e-100 367.9 216 88.9
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 7.7e-100 367.5 214 90.7
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 1.3e-99 366.7 216 88.0
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 3.8e-99 365.2 216 87.5
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 3.8e-99 365.2 216 88.0
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.1e-98 363.6 219 86.8
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-98 363.6 216 87.5
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 1.4e-98 363.2 217 88.5
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.2e-98 362.1 216 88.0
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 5.5e-98 361.3 216 86.6
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 7.2e-98 360.9 227 81.5
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 9.4e-98 360.5 216 87.5
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 1.2e-97 360.1 216 87.0
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 1.2e-97 360.1 216 85.6
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 2.7e-97 359.0 216 86.6
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 3.6e-97 358.6 216 86.6
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 1.0e-96 357.1 219 85.4
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.4e-96 356.7 216 86.6
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 1.4e-96 356.7 219 86.8
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 1.8e-96 356.3 217 86.2
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.8e-96 356.3 217 86.2
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 2.3e-96 355.9 216 84.3
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 5.1e-96 354.8 217 85.7
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 5.1e-96 354.8 246 79.7
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.5e-95 353.2 217 85.3
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.0e-95 352.8 216 85.6
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 2.0e-95 352.8 216 85.2
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 2.6e-95 352.4 218 83.5
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 4.4e-95 351.7 216 84.7
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 4.4e-95 351.7 216 83.8
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 4.4e-95 351.7 213 85.4
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 2.2e-94 349.4 216 83.3
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 4.8e-94 348.2 216 82.9
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 4.8e-94 348.2 216 82.9
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 6.3e-94 347.8 218 82.1
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 8.2e-94 347.4 216 82.4
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 1.4e-93 346.7 216 83.3
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 4.1e-93 345.1 216 82.4
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 4.1e-93 345.1 224 81.7
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 5.3e-93 344.7 257 75.9
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 7.0e-93 344.4 216 83.8
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 1.2e-92 343.6 216 82.4
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 2.6e-92 342.4 216 81.9
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 2.6e-92 342.4 216 81.9
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 8.5e-91 337.4 285 67.4
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.2e-89 333.6 219 81.3
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 2.7e-89 332.4 249 74.7
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 1.8e-88 329.7 319 61.1
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 2.3e-88 329.3 220 80.5
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 7.4e-87 324.3 214 77.6
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 2.2e-86 322.8 227 74.9
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 2.2e-86 322.8 215 80.0
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 8.2e-86 320.9 227 74.0
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 3.8e-83 312.0 219 77.6
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 2.7e-81 305.8 219 76.7
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 2.7e-81 305.8 173 91.9
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 1.8e-80 303.1 227 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 5.7e-79 298.1 226 65.9
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 4.5e-76 288.5 227 63.9
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 4.5e-76 288.5 214 72.0
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 5.5e-74 281.6 227 60.8
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 6.3e-70 268.1 198 73.2
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 4.2e-66 255.4 208 62.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.4e-56 223.8 128 89.8
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 6.8e-56 221.5 128 89.1
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 6.4e-54 214.9 146 76.0
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 4.1e-53 212.2 203 53.7
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.6e-52 210.3 229 49.3
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 4.0e-40 169.1 95 91.6
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 4.0e-40 169.1 95 91.6
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 9.9e-39 164.5 144 65.3
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 6.0e-36 155.2 89 88.8
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 2.3e-35 153.3 222 48.2
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 3.4e-31 139.4 210 41.0
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 1.5e-26 124.0 70 90.0
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 4.8e-17 92.4 161 36.0
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 1.5e-15 87.4 66 72.7
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 1.1e-10 71.2 42 83.3


User provided reference genes

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