Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.4e-133 478.8 237 100.0
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.0e-94 348.2 243 75.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 6.5e-94 347.8 237 76.4
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.9e-93 346.3 182 91.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 9.4e-93 344.0 241 74.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.6e-92 343.2 237 76.4
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.7e-92 342.4 240 75.0
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.7e-92 342.4 240 75.0
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.6e-92 342.0 241 74.3
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 3.6e-92 342.0 201 84.6
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.6e-92 342.0 181 91.7
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 4.6e-92 341.7 239 75.7
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 6.1e-92 341.3 200 82.5
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 7.9e-92 340.9 198 85.9
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.4e-91 340.1 225 78.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-91 339.3 239 74.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.3e-91 339.3 244 73.4
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.0e-91 339.0 188 89.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 3.0e-91 339.0 221 76.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.9e-91 338.6 228 77.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 3.9e-91 338.6 238 73.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.9e-91 338.6 240 75.8
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.7e-91 337.8 197 83.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 8.8e-91 337.4 237 76.4
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.1e-90 337.0 234 75.2
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.0e-90 336.3 245 73.5
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 2.0e-90 336.3 202 82.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 3.3e-90 335.5 225 77.8
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.3e-90 335.1 239 74.1
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.7e-90 334.7 239 72.4
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 5.7e-90 334.7 242 71.9
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.7e-90 334.7 242 72.3
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 7.4e-90 334.3 201 81.6
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 9.7e-90 334.0 239 73.2
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.7e-89 333.2 239 73.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 2.2e-89 332.8 227 76.2
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 2.8e-89 332.4 232 75.4
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.8e-89 332.4 200 83.0
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 2.8e-89 332.4 187 85.0
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 3.7e-89 332.0 237 74.3
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 6.3e-89 331.3 230 74.3
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.3e-89 331.3 187 87.2
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 8.2e-89 330.9 228 76.3
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 8.2e-89 330.9 229 76.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.1e-88 330.5 239 72.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.1e-88 330.5 235 73.2
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.4e-88 330.1 237 73.8
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.4e-88 330.1 197 84.8
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.4e-88 330.1 196 84.7
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.4e-88 330.1 199 81.9
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.8e-88 329.7 240 75.0
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 2.4e-88 329.3 221 76.9
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 2.4e-88 329.3 238 71.0
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.1e-88 328.9 195 85.1
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.1e-88 328.6 195 84.6
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-88 328.2 243 70.0
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 6.9e-88 327.8 231 74.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 9.1e-88 327.4 201 80.6
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-87 327.0 246 71.1
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.2e-87 327.0 188 86.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.5e-87 326.6 197 83.2
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.0e-87 326.2 242 71.5
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.0e-87 326.2 222 73.9
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.6e-87 325.9 188 84.0
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.6e-87 325.9 188 84.0
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.6e-87 325.9 184 86.4
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 3.4e-87 325.5 231 74.0
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 4.5e-87 325.1 200 81.0
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.5e-87 325.1 188 84.6
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.9e-87 324.7 200 80.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 5.9e-87 324.7 200 80.5
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 5.9e-87 324.7 204 80.4
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.7e-87 324.3 239 70.7
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 7.7e-87 324.3 238 71.8
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.7e-87 324.3 223 76.7
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 7.7e-87 324.3 236 71.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 7.7e-87 324.3 186 83.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.0e-86 323.9 187 85.6
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.0e-86 323.9 236 73.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.0e-86 323.9 237 70.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 225 73.8
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 186 84.4
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.7e-86 323.2 236 72.5
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 188 83.0
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 241 71.0
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 5.0e-86 321.6 229 75.5
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.5e-86 320.9 188 84.6
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 8.5e-86 320.9 225 75.1
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.1e-85 320.5 244 70.9
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.4e-85 320.1 177 86.4
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.4e-85 320.1 210 77.6
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.4e-85 320.1 210 77.6
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.4e-85 320.1 189 82.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 2.5e-85 319.3 209 77.5
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 7.2e-85 317.8 234 70.5
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.7e-84 315.1 181 85.1
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 6.1e-84 314.7 223 71.7
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.0e-83 313.9 163 90.8
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.0e-83 313.9 262 66.4
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.3e-83 312.8 166 89.2
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 3.9e-83 312.0 191 79.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.0e-82 309.7 184 82.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.7e-81 306.6 187 80.2
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.4e-80 303.5 195 77.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 4.1e-80 302.0 202 74.3
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 7.0e-80 301.2 225 71.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.5e-79 300.1 169 84.0
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 7.2e-77 291.2 238 68.1
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.7e-76 288.5 283 60.1
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.8e-75 286.6 182 78.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 6.7e-75 284.6 180 72.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 8.2e-73 277.7 216 68.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.5e-70 267.7 226 64.6
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 7.2e-69 264.6 194 67.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.6e-68 263.5 229 65.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.0e-67 259.2 187 64.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 4.0e-67 258.8 227 63.9
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 7.5e-66 254.6 226 60.6
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 3.1e-64 249.2 196 62.8
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.4e-59 233.8 122 93.4
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.5e-58 230.3 160 72.5
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.0e-50 203.4 140 73.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.4e-48 195.3 153 66.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.7e-46 190.3 168 63.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.9e-46 189.1 112 84.8
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.5e-45 186.4 117 76.9
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.7e-41 172.6 104 81.7
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 4.9e-41 172.2 104 80.8
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 8.3e-41 171.4 116 73.3
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 8.3e-41 171.4 84 91.7
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.9e-35 151.4 108 73.1
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.3e-33 144.8 82 86.6
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 7.1e-32 141.7 78 89.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.6e-31 139.0 124 59.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.3e-30 136.7 147 41.5
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.5e-29 134.0 75 89.3
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.7e-28 129.0 71 91.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.0e-22 109.8 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 2.6e-18 96.7 66 65.2
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-16 91.3 49 85.7
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.9e-16 90.5 92 55.4
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 2.5e-13 80.1 87 54.0
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-09 67.0 47 66.0
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.2e-09 67.0 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 5.1e-06 55.8 58 50.0


User provided reference genes

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