Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.6e-116 422.2 231 100.0
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 5.2e-80 301.6 236 70.3
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 5.4e-77 291.6 233 68.2
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.2e-76 290.4 230 63.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.2e-76 290.4 231 66.2
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 4.5e-76 288.5 230 64.3
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.0e-75 287.3 242 65.3
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.9e-75 285.8 235 67.2
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.9e-75 285.8 231 66.7
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 3.8e-75 285.4 234 63.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 5.0e-75 285.0 231 67.1
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.1e-74 283.9 235 64.3
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.5e-74 283.5 234 61.1
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.9e-74 283.1 227 63.4
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 5.6e-74 281.6 226 68.1
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 7.3e-74 281.2 232 62.1
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.0e-72 277.3 243 61.3
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.0e-72 277.3 233 60.9
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.8e-72 276.6 242 65.3
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.3e-72 276.2 230 62.6
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 5.2e-72 275.0 237 62.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 6.8e-72 274.6 242 64.9
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 8.9e-72 274.2 239 64.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.2e-71 273.9 230 61.3
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.2e-71 273.9 237 62.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.6e-71 272.7 242 64.0
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.8e-71 271.6 242 64.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 5.8e-71 271.6 237 59.9
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 7.5e-71 271.2 243 63.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 7.5e-71 271.2 232 63.4
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 7.5e-71 271.2 230 60.9
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 9.8e-71 270.8 243 63.8
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 9.8e-71 270.8 236 62.3
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.3e-70 270.4 232 60.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.9e-70 269.2 244 63.1
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 2.9e-70 269.2 244 63.9
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.9e-70 269.2 230 63.0
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 4.9e-70 268.5 230 66.5
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.4e-70 268.1 243 63.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.1e-69 267.3 230 61.3
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 1.1e-69 267.3 236 59.3
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-69 266.9 244 62.7
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.4e-69 266.9 233 60.1
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.4e-69 266.9 230 64.8
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 1.4e-69 266.9 227 60.8
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.1e-69 265.4 230 64.3
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 7.0e-69 264.6 243 62.6
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 9.2e-69 264.2 231 58.4
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.2e-68 263.8 230 61.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.2e-68 263.8 242 59.1
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 2.0e-68 263.1 230 63.5
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.0e-68 263.1 227 60.4
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.7e-68 262.7 239 58.2
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.6e-68 261.9 235 65.1
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 4.6e-68 261.9 227 61.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 6.0e-68 261.5 242 58.7
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.0e-67 260.8 234 63.2
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.3e-67 260.4 242 58.3
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.7e-67 260.0 236 57.2
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.3e-67 259.6 254 59.1
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.0e-67 259.2 232 60.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 6.6e-67 258.1 230 59.1
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 8.6e-67 257.7 244 61.5
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.5e-66 256.9 230 59.1
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.9e-66 256.5 239 61.9
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 4.7e-65 251.9 243 56.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.2e-65 251.5 230 61.3
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 4.0e-64 248.8 228 57.5
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.2e-63 247.3 245 53.9
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.0e-63 246.5 228 57.9
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 4.4e-63 245.4 251 56.6
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 7.5e-63 244.6 236 60.2
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 9.8e-63 244.2 254 57.5
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.3e-62 243.8 249 55.0
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.2e-62 243.0 254 54.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.4e-61 239.6 237 56.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 9.2e-61 237.7 236 55.5
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 9.2e-61 237.7 243 54.7
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.6e-60 235.3 240 52.9
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 4.3e-58 228.8 256 56.6
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 2.3e-56 223.0 231 50.6
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.1e-56 222.6 233 56.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.1e-56 222.6 345 44.1
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 4.0e-56 222.2 257 55.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 5.2e-56 221.9 255 49.0
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.2e-55 220.7 233 56.2
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 2.0e-55 219.9 233 55.8
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 4.4e-55 218.8 228 53.5
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 5.8e-55 218.4 235 53.6
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.8e-55 218.4 221 55.2
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.1e-53 214.2 235 52.8
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 2.7e-52 209.5 232 50.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.1e-50 204.1 189 62.4
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.5e-50 203.8 226 51.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.5e-50 203.8 230 51.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.9e-50 203.4 182 57.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.5e-50 203.0 228 50.4
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 4.3e-50 202.2 228 50.9
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-48 196.4 225 48.0
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-47 194.1 230 47.4
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.4e-45 187.2 241 47.3
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 5.4e-45 185.3 231 46.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 5.4e-45 185.3 231 46.3
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 1.7e-43 180.3 234 41.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 5.6e-42 175.3 167 52.1
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.6e-41 172.6 167 51.5
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.6e-41 172.6 167 51.5
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 3.6e-41 172.6 235 41.7
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 2.2e-38 163.3 235 44.3
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.8e-38 162.5 171 49.7
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 3.2e-37 159.5 229 39.3
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.7e-36 156.4 140 67.1
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.5e-34 150.6 133 65.4
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.8e-33 146.4 230 45.7
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 5.8e-31 138.7 224 35.7
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.1e-26 124.4 232 34.9
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.9e-26 123.6 228 35.1
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.5e-26 123.2 125 52.0
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 2.8e-25 119.8 231 37.7
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 9.9e-23 111.3 107 55.1
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-21 107.5 89 59.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 7.1e-21 105.1 85 64.7
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 6.7e-19 98.6 128 47.7
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 5.8e-15 85.5 175 33.1
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.2e-12 77.8 158 35.4
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 3.0e-11 73.2 196 35.2
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.0e-11 73.2 45 66.7
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 6.7e-11 72.0 110 39.1
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 6.7e-11 72.0 110 39.1
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.9e-10 70.5 125 36.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.5e-10 70.1 110 38.2
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 3.3e-10 69.7 110 38.2
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 3.3e-10 69.7 110 38.2
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-09 67.8 70 51.4
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 1.5e-07 60.8 283 24.7
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 2.6e-07 60.1 34 79.4
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-06 57.0 65 46.2


User provided reference genes

Program Settings