Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.167 Carica papaya HOM05D003534 ORTHO05D015840 6.2e-59 230.7 128 100.0
Cpa.g.sc62.166 Carica papaya HOM05D003534 ORTHO05D015840 5.1e-53 211.1 116 100.0
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 2.8e-43 178.7 123 83.7
Cpa.g.sc62.168 Carica papaya HOM05D003534 ORTHO05D015840 1.8e-42 176.0 120 84.2
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 2.1e-38 162.5 118 83.1
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 4.6e-38 161.4 130 76.9
Cpa.g.sc62.165 Carica papaya HOM05D003534 ORTHO05D015840 5.1e-37 157.9 105 86.7
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 5.1e-37 157.9 115 80.0
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 8.8e-37 157.1 115 80.0
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 3.3e-36 155.2 115 79.1
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 3.3e-36 155.2 124 76.6
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 3.3e-36 155.2 112 81.2
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 4.3e-36 154.8 113 78.8
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 4.3e-36 154.8 124 75.8
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 4.3e-36 154.8 123 76.4
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 7.4e-36 154.1 117 78.6
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 1.7e-35 152.9 120 74.2
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 2.2e-35 152.5 124 72.6
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 2.2e-35 152.5 112 78.6
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 2.8e-35 152.1 124 72.6
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 3.7e-35 151.8 118 74.6
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 4.8e-35 151.4 117 77.8
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 4.8e-35 151.4 115 77.4
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 6.3e-35 151.0 136 68.4
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 6.3e-35 151.0 124 71.8
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 6.3e-35 151.0 118 75.4
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 8.2e-35 150.6 124 73.4
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 1.1e-34 150.2 119 74.8
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 1.1e-34 150.2 112 77.7
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 1.4e-34 149.8 117 76.1
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 1.8e-34 149.4 117 76.1
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 2.4e-34 149.1 120 74.2
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 4.1e-34 148.3 118 78.0
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 5.3e-34 147.9 121 76.9
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 6.9e-34 147.5 115 75.7
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 6.9e-34 147.5 117 80.3
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 6.9e-34 147.5 129 71.3
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 9.1e-34 147.1 116 76.7
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 9.1e-34 147.1 120 73.3
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 9.1e-34 147.1 120 73.3
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 1.5e-33 146.4 114 76.3
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 2.6e-33 145.6 112 74.1
ATR0579G086 Amborella trichopoda HOM05D003534 ORTHO05D015840 3.4e-33 145.2 112 74.1
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.4e-33 145.2 129 69.0
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 4.5e-33 144.8 128 68.8
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 4.5e-33 144.8 128 69.5
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 4.5e-33 144.8 113 72.6
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 4.5e-33 144.8 111 73.9
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 5.9e-33 144.4 111 75.7
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 7.7e-33 144.1 120 71.7
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.3e-32 143.3 113 73.5
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 1.7e-32 142.9 117 75.2
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 2.2e-32 142.5 120 73.3
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 2.2e-32 142.5 115 74.8
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 2.2e-32 142.5 116 74.1
Haze_02400 Corylus avellana HOM05D003534 ORTHO05D004911 2.9e-32 142.1 116 75.0
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 2.9e-32 142.1 114 76.3
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.9e-32 142.1 108 75.9
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 3.8e-32 141.7 121 71.9
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 5.0e-32 141.4 129 69.0
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 5.0e-32 141.4 104 77.9
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 8.5e-32 140.6 111 74.8
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 8.5e-32 140.6 117 74.4
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 1.1e-31 140.2 120 71.7
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.4e-31 139.8 125 65.6
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 2.5e-31 139.0 128 68.8
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 3.2e-31 138.7 114 71.9
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 5.5e-31 137.9 112 73.2
CAN.G616.17 Capsicum annuum HOM05D003534 ORTHO05D015840 7.2e-31 137.5 120 71.7
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 9.4e-31 137.1 124 71.0
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 9.4e-31 137.1 114 70.2
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 1.2e-30 136.7 130 67.7
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.6e-30 136.3 122 65.6
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 1.6e-30 136.3 118 72.0
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.6e-30 136.3 118 72.0
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.6e-30 136.3 118 72.0
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.6e-30 136.3 109 75.2
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.6e-30 136.3 125 64.0
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.6e-30 136.3 120 64.2
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 2.1e-30 136.0 116 70.7
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.7e-30 135.6 115 72.2
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 3.6e-30 135.2 116 72.4
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 3.6e-30 135.2 110 72.7
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 3.6e-30 135.2 120 70.8
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 4.7e-30 134.8 109 74.3
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 4.7e-30 134.8 118 68.6
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 6.1e-30 134.4 115 70.4
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 6.1e-30 134.4 103 76.7
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 7.9e-30 134.0 129 66.7
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.0e-29 133.7 119 69.7
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 1.4e-29 133.3 128 64.8
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.4e-29 133.3 119 70.6
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 1.4e-29 133.3 119 70.6
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 2.3e-29 132.5 129 65.9
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 3.9e-29 131.7 119 68.1
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 5.1e-29 131.3 122 69.7
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 5.1e-29 131.3 110 67.3
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 8.8e-29 130.6 111 66.7
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 1.5e-28 129.8 114 66.7
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 1.5e-28 129.8 116 69.0
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 2.0e-28 129.4 114 68.4
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 1.3e-27 126.7 116 68.1
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 2.2e-27 125.9 115 66.1
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 2.2e-27 125.9 115 66.1
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 4.8e-27 124.8 114 66.7
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 1.1e-26 123.6 115 65.2
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 5.3e-26 121.3 112 64.3
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 5.3e-26 121.3 114 64.9
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.2e-25 120.2 90 76.7
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 1.5e-25 119.8 127 59.8
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.5e-25 119.8 112 63.4
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 2.0e-25 119.4 113 63.7
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 2.0e-25 119.4 118 62.7
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 7.7e-25 117.5 110 64.5
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 1.3e-24 116.7 119 63.9
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 3.8e-24 115.2 112 61.6
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 5.0e-24 114.8 114 63.2
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 8.5e-24 114.0 105 65.7
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 2.5e-23 112.5 99 66.7
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 3.6e-22 108.6 110 61.8
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 3.6e-22 108.6 110 61.8
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.6e-22 108.6 112 57.1
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.6e-22 108.6 112 57.1
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 1.8e-21 106.3 112 60.7
Hma1.2p1_2496F.1_g323320 Hydrangea macrophylla HOM05D003534 ORTHO05D015840 3.0e-21 105.5 82 74.4
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 3.0e-21 105.5 127 53.5
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 3.0e-21 105.5 127 53.5
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 8.8e-21 104.0 117 55.6
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 1.5e-20 103.2 97 64.9
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 1.5e-20 103.2 97 64.9
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 1.5e-20 103.2 97 64.9
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 1.5e-20 103.2 97 64.9
Hma1.2p1_2192F.1_g316723 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.0e-20 102.8 82 74.4
Hma1.2p1_2192F.1_g316730 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.0e-20 102.8 82 74.4
Hma1.2p1_2192F.1_g316746 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.0e-20 102.8 82 74.4
Hma1.2p1_2496F.1_g323326 Hydrangea macrophylla HOM05D003534 ORTHO05D000126 2.0e-20 102.8 82 74.4
Lj5A195G74 Lonicera japonica HOM05D003534 ORTHO05D015840 2.6e-20 102.4 80 76.2
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 2.6e-20 102.4 116 56.0
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 9.7e-20 100.5 126 54.0
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 9.7e-20 100.5 81 72.8
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 2.8e-19 99.0 114 59.6
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.4e-18 95.9 101 56.4
SMO361G0744 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 5.0e-16 88.2 101 55.4
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 4.2e-15 85.1 65 73.8
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 1.6e-14 83.2 97 56.7
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 4.0e-13 78.6 120 50.8
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 5.2e-13 78.2 138 43.5
BcaC03g16210 Brassica carinata HOM05D003534 ORTHO05D015840 4.4e-12 75.1 114 45.6
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 7.5e-12 74.3 59 72.9
Atru.chr5.3043 Acer truncatum HOM05D003534 ORTHO05D004911 1.1e-10 70.5 106 49.1
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 8.0e-06 54.3 123 39.8


User provided reference genes

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