Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 2.6e-195 685.3 355 100.0
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.7e-85 320.5 314 57.3
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 7.7e-83 311.6 347 52.7
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.1e-81 307.8 286 60.1
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.8e-79 300.4 332 54.2
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 2.3e-79 300.1 338 52.4
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 4.4e-78 295.8 345 51.3
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.8e-74 282.7 336 49.7
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 9.4e-73 278.1 313 50.2
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.0e-71 274.6 352 48.6
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 3.0e-71 273.1 343 49.0
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 4.0e-71 272.7 346 48.8
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.2e-70 271.2 324 50.3
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.2e-70 271.2 318 52.5
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 2.0e-70 270.4 352 48.0
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.7e-70 268.9 324 50.0
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 9.8e-70 268.1 322 50.9
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 4.1e-68 262.7 307 51.1
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 2.7e-67 260.0 321 47.0
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 4.5e-67 259.2 370 46.5
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.3e-66 257.7 370 46.5
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 1.7e-66 257.3 378 43.9
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 2.9e-66 256.5 284 50.7
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 3.8e-66 256.1 369 46.3
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 3.8e-66 256.1 342 48.2
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.5e-65 254.2 324 48.1
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 4.2e-65 252.7 289 52.2
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 1.4e-63 247.7 346 46.0
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 1.8e-63 247.3 279 52.0
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 2.3e-63 246.9 325 46.5
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.5e-62 244.2 369 43.4
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.0e-62 243.8 305 49.5
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.7e-61 240.7 237 56.5
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 3.5e-59 233.0 359 43.5
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 4.5e-59 232.6 347 43.5
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 7.8e-59 231.9 361 43.2
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 1.3e-58 231.1 278 49.3
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 2.9e-58 229.9 309 46.0
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 5.0e-58 229.2 305 47.9
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 8.6e-58 228.4 302 47.0
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 8.6e-58 228.4 360 42.5
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 8.6e-58 228.4 309 45.0
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 8.6e-58 228.4 303 47.5
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 1.9e-57 227.3 372 41.9
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 5.6e-57 225.7 304 47.4
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 1.6e-56 224.2 316 46.5
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 2.1e-56 223.8 345 44.9
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 2.8e-56 223.4 308 46.1
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.4e-55 221.1 300 48.3
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 1.4e-55 221.1 338 44.7
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 1.8e-55 220.7 366 41.8
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 2.3e-55 220.3 368 41.8
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 3.4e-54 216.5 307 44.0
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 4.4e-54 216.1 309 45.0
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 6.4e-53 212.2 297 46.1
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.1e-52 211.5 300 47.0
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.4e-52 211.1 299 46.8
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 3.2e-52 209.9 278 44.6
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 9.2e-52 208.4 357 39.8
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.1e-49 201.4 312 41.7
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.9e-49 200.7 289 44.6
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 2.1e-48 197.2 318 42.1
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 2.1e-48 197.2 288 43.4
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 1.4e-47 194.5 359 39.3
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 6.8e-47 192.2 436 34.2
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 3.4e-46 189.9 264 46.2
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 2.9e-45 186.8 319 42.9
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 1.9e-44 184.1 359 38.2
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 4.1e-44 183.0 309 43.0
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 5.4e-44 182.6 309 42.1
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 1.7e-42 177.6 319 38.2
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 3.4e-38 163.3 304 39.1
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 1.7e-37 161.0 273 43.2
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 1.9e-36 157.5 356 30.9
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 2.1e-32 144.1 216 45.4
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 3.4e-30 136.7 317 31.2
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 2.4e-23 114.0 285 34.4
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 1.2e-22 111.7 186 42.5
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.2e-22 111.7 186 42.5
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 7.6e-22 109.0 254 33.5
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 3.8e-21 106.7 253 33.6
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 1.1e-20 105.1 218 39.0
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 9.3e-20 102.1 291 30.2
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 9.6e-17 92.0 299 28.8
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 2.1e-11 74.3 295 25.1


User provided reference genes

Program Settings