Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 3.1e-162 575.1 295 100.0
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 5.6e-111 404.8 295 71.5
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.4e-106 390.2 297 70.0
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 7.0e-106 387.9 297 70.4
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.6e-105 386.7 297 70.0
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 3.5e-105 385.6 294 69.4
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 2.3e-104 382.9 297 69.7
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.5e-103 380.2 297 68.4
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.5e-103 380.2 296 68.2
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.9e-103 379.8 295 68.1
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 1.9e-103 379.8 296 68.6
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 2.6e-100 369.4 300 64.3
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.3e-99 367.1 296 66.6
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 1.7e-99 366.7 295 65.8
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 2.2e-99 366.3 294 66.3
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 6.4e-99 364.8 302 65.9
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 1.4e-98 363.6 295 66.1
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 4.1e-98 362.1 295 64.1
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.6e-97 360.1 300 66.7
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 6.0e-97 358.2 296 63.2
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 7.8e-97 357.8 328 60.4
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 1.3e-96 357.1 300 65.0
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 1.3e-96 357.1 294 66.3
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 1.7e-96 356.7 296 65.2
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 2.3e-96 356.3 295 64.7
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 3.3e-95 352.4 298 62.8
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 9.5e-95 350.9 299 62.5
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 2.1e-94 349.7 296 63.9
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 8.1e-94 347.8 296 64.5
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 1.5e-92 343.6 301 61.5
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 3.4e-92 342.4 305 63.3
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 7.5e-92 341.3 300 59.3
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 9.9e-92 340.9 296 64.9
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 1.7e-91 340.1 307 61.9
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 4.9e-91 338.6 297 59.9
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 1.4e-90 337.0 317 58.7
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 3.2e-90 335.9 302 61.6
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.1e-90 335.5 303 61.4
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 4.1e-90 335.5 309 61.2
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 4.1e-90 335.5 194 82.0
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 5.4e-90 335.1 288 61.1
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 5.4e-90 335.1 288 61.1
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 5.4e-90 335.1 288 61.1
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 5.4e-90 335.1 305 61.3
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 9.2e-90 334.3 296 61.5
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 9.2e-90 334.3 302 64.2
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 1.2e-89 334.0 288 61.1
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 1.6e-89 333.6 289 60.6
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 3.5e-89 332.4 306 61.8
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 7.8e-89 331.3 298 61.1
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 7.8e-89 331.3 291 63.2
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 3.9e-88 328.9 302 60.3
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.1e-87 327.4 297 62.0
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 1.1e-87 327.4 277 64.3
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 1.5e-87 327.0 283 61.5
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 2.5e-87 326.2 317 58.7
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 4.3e-87 325.5 290 58.6
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 4.3e-87 325.5 299 62.9
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 1.2e-86 323.9 300 59.0
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 1.6e-86 323.6 296 61.1
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 1.6e-86 323.6 306 58.2
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 2.8e-86 322.8 298 59.4
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 4.7e-86 322.0 294 58.8
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 1.4e-85 320.5 293 61.1
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 1.8e-85 320.1 313 58.8
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 2.4e-85 319.7 301 58.1
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 1.2e-84 317.4 299 57.5
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 7.6e-84 314.7 288 58.0
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 7.6e-84 314.7 194 76.8
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 2.2e-83 313.2 236 69.5
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 2.2e-83 313.2 289 59.2
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.9e-83 312.8 289 59.2
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 8.4e-83 311.2 198 75.3
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.4e-82 310.5 301 58.8
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 7.1e-82 308.1 311 55.9
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 4.3e-79 298.9 289 56.4
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 1.5e-76 290.4 178 77.5
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 2.0e-76 290.0 295 55.9
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 5.8e-76 288.5 348 49.4
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.7e-75 287.0 332 53.9
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 8.4e-75 284.6 159 84.3
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.6e-73 280.4 198 67.2
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 6.0e-73 278.5 290 56.6
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 7.8e-73 278.1 154 83.1
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 8.7e-72 274.6 173 75.1
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 7.3e-71 271.6 172 75.6
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 8.1e-70 268.1 254 57.9
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 1.2e-68 264.2 154 81.2
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 2.0e-68 263.5 227 63.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 9.9e-68 261.2 296 51.7
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 4.2e-66 255.8 258 55.8
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.3e-64 250.8 179 65.9
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 5.3e-61 238.8 151 75.5
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 7.6e-60 235.0 307 50.2
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 5.5e-58 228.8 241 55.6
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 3.9e-56 222.6 173 62.4
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 7.4e-55 218.4 297 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 2.2e-51 206.8 194 51.0
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 4.9e-51 205.7 297 45.8
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 1.4e-50 204.1 195 50.8
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 9.3e-50 201.4 251 42.2
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 4.6e-49 199.1 189 51.9
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 1.9e-47 193.7 292 44.9
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 1.2e-44 184.5 192 46.9
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 4.5e-44 182.6 335 37.9
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 1.0e-43 181.4 246 48.0
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 4.2e-42 176.0 179 54.2
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.3e-40 170.2 114 71.1
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 1.5e-39 167.5 197 45.7
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 1.7e-35 154.1 98 71.4
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 3.0e-32 143.3 188 43.6
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 2.6e-28 130.2 183 39.3
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 9.1e-21 105.1 82 64.6
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 7.2e-10 68.9 43 72.1
Nitab4.5_0000001g0050 Nicotiana tabacum HOM05D006942 ORTHO05D008737 6.8e-08 62.4 136 40.4
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 4.8e-06 56.2 64 37.5


User provided reference genes

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