Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 0.0e+00 1450.3 733 100.0
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 1.3e-302 1042.7 743 71.7
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 1.1e-301 1039.6 743 71.3
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 2.3e-299 1031.9 747 71.0
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 2.5e-298 1028.5 743 72.9
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 1.3e-297 1026.2 744 70.2
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 1.5e-295 1019.2 746 70.2
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 1.2e-292 1009.6 737 70.0
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 1.6e-292 1009.2 743 70.1
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 3.3e-290 1001.5 745 69.4
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 4.4e-290 1001.1 745 69.3
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 1.3e-289 999.6 747 68.9
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 3.1e-288 995.0 746 68.6
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 3.1e-288 995.0 746 68.6
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 1.6e-287 992.6 749 68.4
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 2.9e-286 988.4 722 71.1
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 1.1e-285 986.5 740 68.5
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 5.5e-285 984.2 725 69.2
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 1.0e-283 979.9 741 67.3
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 1.3e-281 973.0 742 67.5
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 2.2e-281 972.2 722 70.1
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 2.8e-281 971.8 742 67.5
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 3.7e-281 971.5 741 67.1
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 4.8e-281 971.1 747 67.7
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 4.8e-281 971.1 738 68.0
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 7.0e-280 967.2 730 68.4
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 1.2e-279 966.5 722 69.4
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 1.2e-279 966.5 734 67.8
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 4.5e-279 964.5 730 68.5
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 5.9e-279 964.1 741 67.2
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 2.9e-278 961.8 741 67.1
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 1.9e-277 959.1 738 67.1
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 4.2e-277 958.0 723 68.2
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 9.4e-277 956.8 729 68.3
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 6.8e-275 950.7 742 66.3
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 8.8e-275 950.3 741 66.3
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 8.8e-275 950.3 742 66.3
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 1.5e-274 949.5 724 67.8
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 5.7e-274 947.6 741 66.7
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 2.8e-273 945.3 742 66.0
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 8.3e-273 943.7 729 66.3
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 1.1e-272 943.3 741 66.5
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.4e-272 943.0 741 66.7
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 1.1e-269 933.3 738 65.6
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 7.2e-269 930.6 739 66.0
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 5.2e-267 924.5 748 66.2
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 1.2e-266 923.3 729 65.4
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 2.6e-266 922.2 729 65.4
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 4.9e-265 917.9 721 66.0
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 1.8e-264 916.0 728 66.5
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 5.4e-264 914.4 727 65.3
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 1.2e-263 913.3 734 64.2
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 5.9e-263 911.0 741 64.5
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 1.3e-262 909.8 739 64.5
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 2.9e-262 908.7 740 64.6
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 5.0e-262 907.9 722 65.7
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 4.3e-261 904.8 741 64.1
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 4.3e-261 904.8 747 64.8
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 1.5e-258 896.3 744 63.6
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 2.0e-258 896.0 742 63.9
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 4.4e-258 894.8 744 63.4
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 1.3e-257 893.3 742 63.6
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 3.7e-257 891.7 741 63.2
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 4.9e-257 891.3 744 64.0
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 8.3e-257 890.6 737 62.8
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 2.4e-256 889.0 737 61.3
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 4.1e-256 888.3 744 63.3
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 2.0e-255 885.9 738 61.9
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 5.9e-255 884.4 727 63.4
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 1.0e-254 883.6 738 61.9
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 3.0e-254 882.1 741 63.2
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 2.1e-252 875.9 748 60.8
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 4.0e-251 871.7 730 62.9
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 3.7e-249 865.1 747 61.7
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.3e-246 856.7 728 62.0
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 3.0e-246 855.5 748 61.4
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 5.0e-246 854.7 720 63.5
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 1.1e-245 853.6 743 60.8
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 2.3e-243 845.9 742 60.9
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.2e-242 843.6 726 61.8
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 6.4e-241 837.8 749 60.2
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 1.9e-240 836.3 723 62.2
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 1.2e-239 833.6 740 60.3
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 1.6e-239 833.2 735 59.0
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 3.5e-239 832.0 734 58.7
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 1.0e-238 830.5 735 59.6
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 1.7e-238 829.7 719 60.6
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 5.1e-238 828.2 717 60.7
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 6.6e-238 827.8 730 60.5
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 9.5e-237 823.9 738 60.2
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 4.0e-235 818.5 668 63.0
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 5.2e-235 818.1 739 57.9
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 2.6e-234 815.8 735 59.6
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 9.9e-234 813.9 738 59.2
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 2.9e-233 812.4 729 60.2
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 2.9e-233 812.4 740 59.1
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 3.9e-230 802.0 725 57.8
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 1.9e-229 799.7 720 57.6
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 2.5e-229 799.3 729 58.8
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 3.3e-221 772.3 714 58.1
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 7.3e-221 771.2 714 57.8
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 7.3e-221 771.2 714 57.7
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 1.3e-220 770.4 714 57.7
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 9.0e-219 764.2 714 57.8
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 3.4e-218 762.3 739 54.5
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 4.6e-215 751.9 726 56.6
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 3.0e-214 749.2 745 55.4
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 8.4e-209 731.1 671 58.7
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 9.3e-200 701.0 662 55.3
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 9.3e-200 701.0 754 51.5
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 2.1e-199 699.9 723 54.8
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 1.2e-194 684.1 798 47.5
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 2.0e-194 683.3 718 50.4
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 4.6e-191 672.2 745 49.5
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 3.1e-187 659.4 499 69.9
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 2.0e-186 656.8 744 49.2
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 1.7e-185 653.7 742 49.6
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.1e-184 651.0 671 54.7
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.2e-176 621.7 736 46.5
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 2.7e-175 619.8 468 70.3
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.3e-163 578.9 661 47.4
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 3.5e-146 523.1 371 69.8
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 1.1e-144 518.1 366 73.5
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 2.2e-140 503.8 358 69.6
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.3e-136 489.6 738 42.5
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 2.3e-134 483.8 790 38.1
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 2.0e-125 454.1 784 36.9
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 4.4e-125 453.0 320 75.3
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 1.3e-121 441.4 731 36.4
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.3e-121 440.7 759 36.4
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.9e-120 437.6 738 39.4
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-98 364.8 759 33.5
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 2.0e-93 347.8 450 46.7
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 4.8e-79 300.1 250 61.2
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-63 247.7 368 36.7
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 8.2e-63 246.1 502 32.9
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-61 241.1 388 37.6
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 7.2e-59 233.0 298 45.6
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.0e-58 229.6 288 40.6
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-48 198.0 294 38.8
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 1.9e-43 181.8 251 37.8
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-41 175.6 166 48.2
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-39 168.7 159 47.2
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.1e-38 164.1 174 43.7
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 7.7e-37 159.8 159 56.0
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.2e-35 154.1 136 50.0
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.6e-34 152.1 189 48.7
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 2.1e-34 151.8 653 23.9
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.6e-34 151.0 154 45.5
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 4.0e-33 147.5 301 35.9
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 4.4e-32 144.1 675 23.9
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.8e-32 142.9 150 43.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.1e-30 137.5 146 43.8
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.0e-28 130.6 122 46.7
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.1e-26 123.6 123 46.3
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 4.4e-24 117.5 177 36.7
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 7.5e-24 116.7 499 19.6
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 2.2e-23 115.2 119 43.7
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.4e-23 113.6 130 42.3
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-22 111.7 132 42.4
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.8e-21 106.7 103 45.6
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.6e-20 103.2 119 38.7
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.3e-19 101.3 99 47.5
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.3e-17 95.1 89 46.1
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-13 82.8 85 45.9
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.6e-13 82.4 122 40.2
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 6.6e-12 77.0 66 50.0
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 2.1e-10 72.0 52 71.2
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.9e-07 60.8 55 49.1
Actinidia35884 Actinidia chinensis HOM05D000084 ORTHO05D014724 1.4e-06 59.3 80 47.5


User provided reference genes

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