Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 5.1e-63 244.2 119 100.0
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-29 132.9 93 73.1
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 8.2e-29 130.6 91 70.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-28 130.2 91 70.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.8e-28 129.4 91 70.3
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.4e-28 129.0 90 72.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 7.6e-27 124.0 90 65.6
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 5.0e-26 121.3 89 67.4
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.0e-26 121.3 85 71.8
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 6.5e-26 120.9 84 69.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 8.4e-26 120.6 89 65.2
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.4e-25 119.8 90 65.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-25 119.8 86 67.4
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.9e-25 119.4 113 56.6
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.5e-25 119.0 93 65.6
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.2e-25 118.6 88 67.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.2e-25 118.2 94 64.9
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 5.5e-25 117.9 89 67.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.2e-24 116.7 89 67.4
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.2e-24 116.7 89 62.9
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.2e-24 116.7 88 64.8
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.1e-24 115.9 87 70.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.1e-24 115.9 90 66.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.7e-24 115.5 88 67.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 4.6e-24 114.8 89 64.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.1e-24 114.4 86 62.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.0e-23 113.6 94 63.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-23 113.2 86 61.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.8e-23 112.8 84 66.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.8e-23 112.8 86 61.6
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.8e-23 112.8 86 61.6
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.3e-23 112.5 86 62.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.0e-23 112.1 89 60.7
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.1e-23 111.3 84 65.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.1e-23 111.3 87 64.4
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.1e-23 111.3 88 65.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.7e-23 110.5 89 66.3
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 8.7e-23 110.5 86 60.5
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.1e-22 110.2 91 60.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.5e-22 109.8 87 63.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.9e-22 109.4 118 49.2
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 4.3e-22 108.2 89 62.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 4.3e-22 108.2 94 58.5
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 5.7e-22 107.8 86 59.3
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 5.7e-22 107.8 84 64.3
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.7e-22 107.8 89 64.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 7.4e-22 107.5 87 59.8
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.7e-22 107.1 95 50.5
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.6e-21 106.3 89 64.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.6e-21 106.3 86 65.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.2e-21 105.9 84 61.9
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.8e-21 104.8 85 57.6
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 6.3e-21 104.4 86 59.3
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.3e-21 104.4 86 59.3
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 6.3e-21 104.4 86 59.3
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 6.3e-21 104.4 87 59.8
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 8.2e-21 104.0 89 56.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 8.2e-21 104.0 89 56.2
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 8.2e-21 104.0 89 65.2
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 8.2e-21 104.0 84 61.9
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.1e-20 103.6 86 59.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.1e-20 103.6 87 63.2
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-20 103.2 85 64.7
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.4e-20 103.2 85 57.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-20 103.2 115 47.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.4e-20 103.2 90 54.4
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.4e-20 103.2 90 61.1
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.4e-20 103.2 85 64.7
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.8e-20 102.8 89 59.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.4e-20 102.4 86 61.6
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.1e-20 102.1 86 57.0
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.1e-20 102.1 89 59.6
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.1e-20 101.7 95 51.6
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.1e-20 101.7 88 55.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.1e-20 101.7 91 54.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 5.3e-20 101.3 85 62.4
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 5.3e-20 101.3 85 62.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 5.3e-20 101.3 86 62.8
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.9e-20 100.9 90 53.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.9e-20 100.9 90 53.3
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.9e-20 100.9 87 60.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 9.0e-20 100.5 83 56.6
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.0e-20 100.5 85 55.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 9.0e-20 100.5 89 61.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 9.0e-20 100.5 96 52.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.0e-20 100.5 86 60.5
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-19 100.1 86 55.8
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-19 100.1 86 55.8
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.2e-19 100.1 84 60.7
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.5e-19 99.8 90 53.3
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.5e-19 99.8 92 55.4
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-19 99.8 81 59.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.0e-19 99.4 83 56.6
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-19 98.6 86 54.7
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 3.4e-19 98.6 86 54.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 3.4e-19 98.6 89 59.6
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.9e-19 97.8 88 58.0
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.9e-19 97.8 87 59.8
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.9e-19 97.8 99 51.5
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 7.7e-19 97.4 87 59.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 7.7e-19 97.4 87 59.8
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.0e-18 97.1 88 60.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.0e-18 97.1 88 58.0
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.3e-18 96.7 89 58.4
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.7e-18 96.3 87 58.6
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.9e-18 95.5 89 50.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.9e-18 95.5 91 56.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.8e-18 95.1 86 52.3
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.5e-18 94.0 91 59.3
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.5e-18 94.0 89 58.4
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 53.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 53.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 53.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 53.5
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.4e-17 93.2 92 59.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-17 92.8 90 57.8
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-17 92.8 86 54.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.9e-17 92.8 87 59.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.9e-17 92.8 88 55.7
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.9e-17 92.8 84 59.5
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.5e-17 92.4 92 53.3
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.5e-17 92.4 92 53.3
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.2e-17 92.0 84 57.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.2e-17 91.7 87 57.5
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 4.2e-17 91.7 88 53.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 4.2e-17 91.7 85 58.8
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.5e-17 91.3 80 60.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.2e-17 90.9 92 55.4
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.4e-17 90.5 85 56.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-16 90.1 81 58.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.2e-16 90.1 85 56.5
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.6e-16 89.7 88 58.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.1e-16 89.4 89 52.8
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.1e-16 89.4 89 46.1
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 2.7e-16 89.0 89 50.6
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.1e-16 87.8 86 57.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.9e-16 87.4 88 53.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 7.9e-16 87.4 86 57.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-15 86.7 79 51.9
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.8e-15 86.3 74 58.1
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.8e-15 86.3 85 54.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.3e-15 85.9 87 51.7
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.3e-15 85.9 91 53.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.0e-15 85.5 89 49.4
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.0e-15 85.5 84 51.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.0e-15 85.5 82 53.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 3.9e-15 85.1 89 56.2
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.9e-15 85.1 92 53.3
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-15 85.1 84 56.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.1e-15 84.7 85 54.1
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.1e-15 84.7 88 53.4
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 5.1e-15 84.7 85 51.8
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.1e-15 84.7 84 56.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.8e-15 84.0 89 51.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.5e-14 82.4 91 53.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.5e-14 82.4 84 57.1
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 7.4e-14 80.9 91 50.5
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.7e-14 80.5 82 51.2
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 9.7e-14 80.5 87 51.7
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 9.7e-14 80.5 88 44.3
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-13 80.1 85 56.5
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-13 79.3 84 50.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 2.2e-13 79.3 69 59.4
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 84 50.0
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.1e-12 77.0 87 43.7
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 85 51.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 86 53.5
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.4e-12 75.9 83 54.2
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 93 49.5
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 86 46.5
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 87 50.6
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 83 53.0
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.7e-11 70.9 83 53.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 7.7e-11 70.9 96 44.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.0e-10 70.5 85 49.4
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.7e-10 69.7 85 44.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.8e-10 68.6 91 47.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.9e-09 66.2 60 58.3
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-09 66.2 84 46.4
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.2e-09 64.3 90 43.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.2e-09 64.3 88 40.9
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-08 63.5 90 40.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-08 63.5 90 40.0
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.1e-08 62.8 76 42.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-07 59.3 79 45.6
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.5e-06 56.6 89 39.3
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 1.5e-06 56.6 86 38.4


User provided reference genes

Program Settings