Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 7.8e-45 183.3 88 100.0
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.2e-18 95.5 97 57.7
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-17 91.7 93 54.8
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 5.3e-17 90.9 93 52.7
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 6.9e-17 90.5 96 56.2
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 6.9e-17 90.5 96 56.2
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.2e-16 89.7 93 53.8
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.5e-16 89.4 96 55.2
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.6e-16 88.6 93 53.8
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 2.6e-16 88.6 96 53.1
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.0e-15 86.7 99 52.5
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.3e-15 86.3 89 53.9
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.7e-15 85.9 96 54.2
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.7e-15 85.9 97 50.5
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.9e-15 85.1 99 51.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.8e-15 84.7 100 51.0
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.8e-15 84.7 92 52.2
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 6.5e-15 84.0 96 54.2
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 6.5e-15 84.0 97 53.6
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 6.5e-15 84.0 93 52.7
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 6.5e-15 84.0 96 52.1
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 8.5e-15 83.6 96 50.0
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 8.5e-15 83.6 88 50.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 8.5e-15 83.6 90 50.0
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.1e-14 83.2 90 51.1
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.1e-14 83.2 90 51.1
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-14 82.8 96 54.2
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-14 82.8 96 53.1
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.9e-14 82.4 96 52.1
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.9e-14 82.4 93 50.5
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.9e-14 82.4 97 49.5
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 2.5e-14 82.0 95 51.6
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.5e-14 82.0 96 47.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 3.2e-14 81.6 96 49.0
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.2e-14 81.6 96 52.1
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.2e-14 81.6 107 48.6
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 3.2e-14 81.6 96 53.1
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 4.2e-14 81.3 91 48.4
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 5.5e-14 80.9 98 50.0
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 5.5e-14 80.9 97 48.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 5.5e-14 80.9 97 48.5
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 5.5e-14 80.9 96 50.0
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 9.4e-14 80.1 94 51.1
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 9.4e-14 80.1 89 49.4
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 9.4e-14 80.1 93 49.5
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.6e-13 79.3 96 51.0
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.6e-13 79.3 96 47.9
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 2.1e-13 79.0 96 49.0
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.1e-13 79.0 94 50.0
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 2.7e-13 78.6 92 50.0
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 3.6e-13 78.2 89 49.4
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.6e-13 78.2 91 47.3
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.6e-13 78.2 99 49.5
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 7.9e-13 77.0 89 48.3
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 1.0e-12 76.6 87 55.2
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.4e-12 76.3 91 47.3
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.4e-12 76.3 91 47.3
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.4e-12 76.3 95 48.4
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.8e-12 75.9 96 47.9
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.8e-12 75.9 93 48.4
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.8e-12 75.9 93 47.3
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.3e-12 75.5 88 53.4
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 3.0e-12 75.1 95 48.4
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.9e-12 74.7 91 50.5
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.9e-12 74.7 94 44.7
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 3.9e-12 74.7 90 47.8
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 5.1e-12 74.3 97 45.4
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 6.7e-12 73.9 90 46.7
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 6.7e-12 73.9 90 46.7
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 6.7e-12 73.9 90 44.4
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 6.7e-12 73.9 90 48.9
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 6.7e-12 73.9 93 47.3
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 6.7e-12 73.9 88 46.6
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 8.8e-12 73.6 90 46.7
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 8.8e-12 73.6 90 46.7
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.5e-11 72.8 94 43.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.0e-11 72.4 89 49.4
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 2.0e-11 72.4 88 40.9
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.0e-11 72.4 97 52.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-11 72.0 92 47.8
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 4.3e-11 71.2 93 41.9
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 5.7e-11 70.9 93 44.1
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.3e-10 69.7 96 42.7
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.7e-10 69.3 99 47.5
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 2.2e-10 68.9 90 43.3
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.2e-10 68.9 97 42.3
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 2.8e-10 68.6 93 44.1
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 3.7e-10 68.2 94 44.7
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 4.8e-10 67.8 96 47.9
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 4.8e-10 67.8 96 47.9
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.3e-10 67.4 100 45.0
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 6.3e-10 67.4 92 48.9
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.4e-09 66.2 102 45.1
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.4e-09 65.5 96 49.0
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.1e-09 65.1 90 43.3
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.1e-09 65.1 90 43.3
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.1e-09 65.1 90 43.3
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.1e-09 65.1 90 43.3
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.1e-09 65.1 90 43.3
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.1e-09 64.7 100 46.0
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 4.1e-09 64.7 95 48.4
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 4.1e-09 64.7 93 43.0
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 5.3e-09 64.3 90 43.3
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.3e-09 64.3 103 44.7
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 6.9e-09 63.9 92 41.3
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 9.1e-09 63.5 88 43.2
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 9.1e-09 63.5 94 40.4
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 1.2e-08 63.2 83 44.6
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.0e-08 62.4 95 47.4
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 2.6e-08 62.0 86 43.0
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 2.6e-08 62.0 95 38.9
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 5.9e-08 60.8 89 47.2
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 7.7e-08 60.5 98 41.8
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.7e-08 60.5 88 39.8
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.0e-07 60.1 89 41.6
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.0e-07 60.1 87 43.7
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.0e-07 60.1 93 43.0
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 2.9e-07 58.5 88 39.8
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 5.0e-07 57.8 88 37.5
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.5e-07 57.4 92 40.2
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 6.5e-07 57.4 75 45.3
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 8.5e-07 57.0 77 40.3
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.5e-07 57.0 77 46.8
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 1.1e-06 56.6 86 41.9
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.4e-06 56.2 88 37.5
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.9e-06 55.8 89 40.4
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.5e-06 55.5 87 42.5
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 3.2e-06 55.1 98 39.8
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.2e-06 55.1 80 45.0
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 3.2e-06 55.1 92 39.1
Manes.17G033400 Manihot esculenta HOM05D038532 ORTHO05D005373 7.2e-06 53.9 88 36.4
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 9.4e-06 53.5 81 37.0


User provided reference genes

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