Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 0.0e+00 1210.7 605 100.0
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 2.4e-140 503.4 540 51.9
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 2.4e-137 493.4 459 57.7
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 3.0e-135 486.5 493 52.7
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 3.6e-133 479.6 479 54.3
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 7.4e-126 455.3 485 53.2
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 9.6e-126 454.9 512 50.8
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 9.9e-123 444.9 494 50.6
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.1e-121 441.4 535 48.6
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 1.1e-121 441.4 487 49.1
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 4.3e-118 429.5 490 50.0
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.6e-117 427.6 490 48.0
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 6.2e-117 425.6 493 50.9
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 9.0e-116 421.8 512 46.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 9.0e-116 421.8 487 47.4
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 1.7e-114 417.5 455 51.4
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 8.4e-114 415.2 484 50.6
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 9.3e-113 411.8 482 49.6
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.7e-112 410.2 486 49.8
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 6.0e-112 409.1 491 48.3
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 3.9e-111 406.4 496 48.2
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 8.7e-111 405.2 484 46.9
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 4.3e-110 402.9 486 48.8
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 7.4e-110 402.1 502 47.6
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 2.8e-109 400.2 498 47.8
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.3e-109 399.1 486 48.6
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 1.4e-108 397.9 487 47.4
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.4e-108 397.1 486 48.8
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 4.5e-107 392.9 462 47.6
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 7.6e-107 392.1 493 46.0
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 1.3e-106 391.3 463 49.2
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 2.2e-106 390.6 493 45.0
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 2.5e-105 387.1 489 46.6
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.2e-104 384.8 434 48.8
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 2.7e-104 383.6 492 47.0
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 4.6e-104 382.9 495 47.9
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.0e-103 381.7 495 46.9
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 1.3e-103 381.3 525 42.9
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 2.3e-103 380.6 498 47.0
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 3.0e-103 380.2 505 43.8
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 5.1e-103 379.4 513 46.0
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.9e-102 377.5 513 46.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 2.5e-102 377.1 494 43.7
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 3.3e-102 376.7 513 45.6
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 7.4e-102 375.6 477 43.6
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.2e-101 374.0 426 50.7
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 6.9e-100 369.0 496 43.8
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 1.2e-99 368.2 548 42.5
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 1.2e-99 368.2 499 43.5
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.0e-99 367.5 495 46.1
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.7e-98 364.4 477 43.8
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 5.0e-98 362.8 419 47.5
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 5.0e-98 362.8 493 43.0
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 5.0e-98 362.8 499 41.9
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 8.5e-98 362.1 495 42.6
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 1.2e-96 358.2 500 42.6
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 3.6e-96 356.7 372 51.3
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 3.6e-96 356.7 489 42.9
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.0e-95 355.1 557 39.0
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.2e-93 347.4 487 44.1
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 6.3e-93 345.9 551 40.1
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.8e-92 344.4 486 44.2
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.4e-92 344.0 482 43.6
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 4.5e-91 339.7 493 43.4
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 2.9e-90 337.0 528 39.6
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 1.1e-89 335.1 433 44.6
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 4.2e-89 333.2 434 44.9
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.2e-88 331.6 364 47.5
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 1.8e-87 327.8 485 41.0
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 2.3e-87 327.4 372 50.3
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.8e-85 320.5 487 41.5
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 2.8e-85 320.5 423 44.9
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 3.7e-85 320.1 342 50.3
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 7.7e-83 312.4 345 49.0
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.7e-82 311.2 517 39.7
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.8e-82 310.1 433 44.1
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 1.4e-79 301.6 428 40.7
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 8.8e-79 298.9 481 40.7
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 1.1e-76 292.0 655 31.6
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 2.4e-76 290.8 512 36.1
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 9.1e-76 288.9 339 48.7
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.5e-75 287.0 376 44.7
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.5e-75 286.6 342 45.0
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.0e-74 285.4 431 39.9
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.3e-74 285.0 343 44.9
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.3e-74 285.0 389 42.7
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 6.5e-74 282.7 380 45.5
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 6.5e-74 282.7 412 42.7
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 2.7e-72 277.3 382 41.4
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.1e-68 265.4 383 41.0
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 5.9e-67 259.6 347 41.8
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 1.0e-66 258.8 346 44.2
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 2.3e-58 231.1 230 52.2
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 1.9e-49 201.4 270 41.9
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.3e-49 200.7 208 55.3
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 9.2e-44 182.6 455 30.8
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.9e-41 174.9 206 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 4.4e-38 163.7 503 25.8
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 4.9e-37 160.2 269 36.8
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 4.9e-37 160.2 178 48.9
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 2.5e-33 147.9 151 51.0
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 5.6e-25 120.2 194 35.6
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.9e-17 95.1 296 28.4
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.4e-15 89.0 135 43.0
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 9.0e-15 86.3 156 35.9
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 2.0e-14 85.1 227 30.0
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 3.4e-14 84.3 161 34.8
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.5e-14 84.0 96 50.0
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 6.4e-13 80.1 153 37.9
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.0e-11 73.6 83 53.0
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.5e-09 68.2 92 38.0
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 2.8e-08 64.7 109 40.4
Thecc.02G329300 Theobroma cacao HOM05D013022 ORTHO05D007252 7.6e-06 56.6 87 36.8


User provided reference genes

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