Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 0.0e+00 1657.1 835 100.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1091.3 849 67.5
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1090.5 848 67.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1086.2 849 67.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.1e-311 1073.2 850 66.8
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 8.6e-311 1070.1 847 65.8
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.3e-309 1066.2 850 65.9
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 2.1e-309 1065.4 858 66.6
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 3.1e-308 1061.6 875 65.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.7e-306 1055.8 845 65.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 2.1e-304 1048.9 822 67.4
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 4.6e-304 1047.7 850 65.6
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.0e-303 1045.0 851 66.4
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.0e-303 1045.0 848 64.9
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.9e-302 1042.3 849 64.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 4.3e-302 1041.2 850 65.6
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 2.8e-301 1038.5 854 65.3
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.4e-300 1035.4 849 65.4
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.4e-300 1035.4 853 64.1
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.2e-299 1033.1 852 65.5
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.2e-299 1033.1 846 64.5
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.4e-299 1031.6 850 64.6
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.9e-298 1028.5 850 65.9
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.8e-298 1028.1 826 65.5
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.5e-298 1026.9 836 64.5
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.6e-296 1022.7 847 64.2
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.6e-296 1022.7 847 63.8
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.7e-296 1021.9 847 63.8
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 3.6e-296 1021.5 850 65.1
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 4.6e-296 1021.1 846 64.5
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.3e-295 1018.8 850 64.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 8.7e-295 1016.9 850 64.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 8.7e-295 1016.9 842 64.3
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 8.2e-293 1010.4 855 62.9
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.5e-291 1006.1 777 69.6
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 2.2e-290 1002.3 869 62.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 4.2e-289 998.0 861 63.0
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.6e-288 995.0 837 64.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.6e-288 995.0 841 64.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.0e-287 993.4 829 64.5
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.4e-287 993.0 876 62.2
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.8e-287 992.6 830 64.9
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.8e-287 992.6 830 64.9
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.8e-287 992.6 853 63.3
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 6.7e-287 990.7 846 62.5
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.0e-286 989.2 854 62.2
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 3.3e-286 988.4 830 64.6
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 4.4e-286 988.0 823 64.8
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 9.7e-286 986.9 849 63.1
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.3e-285 986.5 850 62.7
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.7e-285 986.1 848 62.4
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 3.7e-285 984.9 849 62.8
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 5.3e-284 981.1 836 63.6
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 6.9e-284 980.7 846 62.8
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.7e-282 976.1 852 62.7
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 2.2e-282 975.7 837 63.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.1e-281 973.4 822 63.3
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 1.9e-281 972.6 844 62.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 3.2e-281 971.8 849 62.5
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 5.5e-281 971.1 859 61.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 7.2e-281 970.7 849 62.4
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 1.6e-280 969.5 853 60.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 6.1e-280 967.6 855 62.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.0e-279 966.8 853 61.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.8e-279 966.1 836 62.0
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.3e-279 965.7 855 61.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 8.8e-279 963.8 858 62.5
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.5e-278 963.0 848 61.8
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.7e-277 959.5 858 61.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 5.3e-276 954.5 855 61.5
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 7.0e-276 954.1 856 59.5
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 9.1e-276 953.7 712 69.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.0e-275 952.6 852 58.9
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 3.5e-275 951.8 869 61.0
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.7e-274 949.5 829 62.5
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 8.5e-274 947.2 860 59.4
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.9e-273 946.0 843 60.5
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 2.1e-272 942.6 818 62.0
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.1e-272 942.6 907 58.2
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 4.7e-272 941.4 810 62.0
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 2.8e-269 932.2 855 60.5
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.8e-268 929.5 849 59.7
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 2.5e-265 919.1 852 60.0
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 5.5e-265 917.9 849 58.0
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 3.6e-264 915.2 852 59.7
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.8e-263 912.9 852 59.2
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.6e-262 909.1 853 58.9
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 4.4e-262 908.3 721 67.1
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 4.7e-256 888.3 683 67.3
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 4.0e-255 885.2 867 57.0
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.7e-253 879.8 859 57.0
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.7e-253 879.8 859 57.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.0e-252 874.4 847 57.5
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-250 870.2 852 56.8
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.2e-248 863.6 850 54.8
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 1.8e-244 849.7 888 51.8
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.4e-231 807.0 717 59.7
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 5.8e-230 801.6 640 65.9
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.3e-218 763.8 897 48.5
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 8.6e-218 761.1 714 56.9
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 7.6e-214 748.0 892 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.4e-212 743.0 749 52.7
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 4.5e-206 722.2 698 58.6
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.0e-190 670.2 850 49.3
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.6e-184 650.6 828 45.5
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 2.2e-181 640.2 820 48.2
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 3.0e-178 629.8 696 50.0
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.8e-165 586.3 792 45.3
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 2.6e-161 573.5 801 43.1
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.6e-150 537.7 386 73.8
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.6e-126 458.0 703 43.0
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.1e-119 433.3 479 52.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.0e-117 428.7 259 81.5
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 4.7e-107 393.3 335 63.3
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 7.6e-97 359.4 241 76.8
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 1.2e-89 335.5 289 63.0
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.8e-50 205.3 548 30.7
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.2e-48 198.4 567 30.9
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.1e-47 196.1 572 28.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.2e-47 193.4 549 28.4
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 1.2e-36 159.5 111 72.1
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.2e-35 155.2 238 44.5
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.2e-35 155.2 238 44.5
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 1.1e-34 152.9 95 78.9
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 9.1e-34 149.8 256 37.1
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.7e-33 148.3 179 44.7
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 2.7e-33 148.3 252 36.9
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.5e-31 141.7 275 33.5
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 9.4e-31 139.8 284 35.2
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 2.1e-30 138.7 198 44.9
vmacro22218 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.3e-29 135.2 82 78.0
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.5e-28 132.5 602 26.6
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 2.2e-27 128.6 174 46.0
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 4.8e-27 127.5 253 37.9
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 7.0e-26 123.6 276 33.7
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 8.6e-24 116.7 473 27.5
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 9.5e-23 113.2 306 30.4
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 8.0e-22 110.2 260 31.5
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.1e-18 99.8 366 28.1
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.0e-17 95.5 143 39.9
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 4.5e-17 94.4 281 28.5
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.5e-15 89.4 258 27.9
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 7.3e-15 87.0 148 35.1
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 2.1e-14 85.5 323 25.7
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.8e-13 82.4 75 53.3
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 1.2e-12 79.7 170 31.2
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 1.5e-12 79.3 189 32.3
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 5.8e-12 77.4 421 23.8
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 9.8e-12 76.6 128 34.4
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 3.7e-11 74.7 127 34.6
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.2e-10 71.6 116 36.2
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 7.8e-09 67.0 103 35.0
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 1.0e-08 66.6 143 32.9
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 1.9e-07 62.4 180 28.9


User provided reference genes

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