Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.0e-118 429.1 219 100.0
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 2.8e-67 259.2 232 59.1
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 2.8e-67 259.2 232 59.1
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 4.6e-62 241.9 232 54.3
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 4.6e-62 241.9 231 56.3
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 6.7e-61 238.0 218 55.5
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 2.4e-58 229.6 233 52.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 3.1e-58 229.2 228 52.2
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.3e-56 223.8 229 52.8
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 6.5e-56 221.5 232 50.9
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 6.5e-56 221.5 235 50.6
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 8.5e-56 221.1 229 54.1
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.1e-55 220.7 229 50.7
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.5e-55 219.5 229 53.7
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 5.5e-55 218.4 232 52.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.6e-54 216.9 233 48.9
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 7.9e-54 214.5 230 51.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.8e-53 213.4 231 50.2
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.3e-53 213.0 231 48.9
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 3.9e-53 212.2 222 49.5
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.9e-52 209.9 231 48.5
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.5e-52 209.5 219 48.9
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.3e-52 208.8 234 45.3
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.3e-52 208.8 222 50.9
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 7.4e-52 208.0 217 45.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.6e-51 206.8 231 48.1
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.2e-51 206.5 232 46.1
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.1e-50 204.1 232 45.7
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.8e-50 203.4 229 46.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.8e-50 203.4 226 47.3
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 4.1e-50 202.2 232 44.4
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 9.1e-50 201.1 228 50.9
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 9.1e-50 201.1 232 46.1
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.2e-49 200.7 223 46.6
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.6e-49 199.5 241 45.2
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 7.7e-49 198.0 229 45.9
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.2e-48 196.4 223 46.6
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 2.9e-48 196.1 190 50.5
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 8.5e-48 194.5 223 43.9
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 8.5e-48 194.5 223 46.2
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 4.2e-47 192.2 232 44.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 4.2e-47 192.2 224 46.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 4.2e-47 192.2 223 45.3
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 4.2e-47 192.2 223 47.1
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 9.4e-47 191.0 226 46.5
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 9.4e-47 191.0 226 46.5
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.0e-45 187.6 235 45.1
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 1.4e-45 187.2 221 45.2
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 3.9e-45 185.7 225 45.3
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 3.9e-45 185.7 210 47.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 3.9e-45 185.7 226 45.6
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 3.9e-45 185.7 226 45.6
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.7e-45 184.9 221 46.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 8.8e-45 184.5 226 46.5
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.1e-44 184.1 226 43.4
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.1e-44 184.1 235 45.1
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-44 183.7 231 42.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 3.3e-44 182.6 230 45.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.7e-44 181.8 219 47.5
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.7e-43 180.3 229 41.5
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.7e-43 180.3 231 43.7
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.8e-43 178.7 252 39.7
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 4.8e-43 178.7 222 41.9
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-42 177.6 234 43.6
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.8e-42 176.8 244 41.4
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 2.4e-42 176.4 223 42.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.1e-42 176.0 240 41.7
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 4.1e-42 175.6 219 41.6
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 5.3e-42 175.3 223 43.5
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 6.9e-42 174.9 237 42.2
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.9e-42 174.9 232 42.2
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 9.1e-42 174.5 215 44.7
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.2e-41 174.1 223 42.6
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.6e-41 172.9 242 43.4
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.4e-41 172.6 220 42.3
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 5.9e-41 171.8 246 39.8
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.0e-40 171.0 191 49.7
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.0e-40 171.0 223 43.9
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 2.2e-40 169.9 231 40.7
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.9e-39 166.8 244 39.3
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 4.2e-39 165.6 208 40.9
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 4.2e-39 165.6 223 39.9
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.2e-39 165.6 259 39.0
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 9.4e-39 164.5 225 41.3
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.7e-38 162.9 225 41.8
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 3.6e-38 162.5 255 40.8
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 6.1e-38 161.8 207 42.0
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.8e-37 160.2 197 43.1
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.9e-37 159.1 254 39.4
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 5.2e-37 158.7 213 42.3
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.3e-36 156.0 209 42.1
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 3.3e-36 156.0 222 37.8
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 4.4e-36 155.6 218 40.4
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 7.4e-36 154.8 200 40.0
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 7.4e-36 154.8 214 41.1
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 7.4e-36 154.8 219 40.6
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.3e-35 154.1 215 40.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.7e-35 153.7 214 40.2
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 2.8e-35 152.9 219 41.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 7.0e-34 148.3 208 37.5
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 4.5e-33 145.6 195 45.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.0e-32 144.4 285 35.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.0e-32 144.4 220 37.3
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.2e-32 143.3 210 39.0
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.5e-32 141.7 212 39.2
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 8.5e-32 141.4 222 40.5
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-31 141.0 215 38.1
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.9e-31 140.2 215 41.4
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 5.5e-31 138.7 184 40.8
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 9.4e-31 137.9 218 38.5
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.6e-30 137.1 207 37.7
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.2e-28 131.0 220 36.4
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.3e-27 127.5 230 32.6
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.7e-27 127.1 235 35.7
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 2.8e-27 126.3 133 49.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.1e-26 122.9 226 33.6
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 4.1e-26 122.5 221 34.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.3e-26 122.1 226 33.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.3e-24 117.5 243 32.9
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-23 114.4 174 39.7
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.9e-23 113.6 130 44.6
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 9.4e-23 111.3 117 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.7e-22 109.0 209 31.6
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.0e-21 107.8 97 48.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.0e-21 106.3 71 66.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 4.0e-21 105.9 124 41.1
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 3.4e-20 102.8 97 49.5
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.5e-20 101.7 90 54.4
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 7.5e-20 101.7 186 33.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.4e-18 97.4 227 30.8
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 4.1e-18 95.9 58 77.6
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 4.1e-18 95.9 58 77.6
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.0e-17 93.6 174 34.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.9e-17 92.0 96 47.9
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 6.5e-16 88.6 65 64.6
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 8.5e-16 88.2 121 44.6
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 7.2e-15 85.1 125 41.6
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 2.3e-13 80.1 173 33.5
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 2.0e-12 77.0 92 42.4
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 9.8e-12 74.7 111 37.8
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.9e-11 72.4 231 26.8
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.8e-10 70.5 130 35.4
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.7e-08 63.9 67 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 5.0e-08 62.4 115 31.3
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.1e-07 61.2 217 27.6
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.9e-07 60.5 208 23.6
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 3.3e-07 59.7 62 46.8


User provided reference genes

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