Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2529.2 Carica papaya HOM05D004182 ORTHO05D010127 2.0e-46 188.7 92 100.0
arahy.Tifrunner.gnm1.ann1.U90T8C Arachis hypogaea HOM05D004182 ORTHO05D010127 3.2e-33 144.8 109 71.6
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 4.2e-33 144.4 108 71.3
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 2.3e-31 138.7 105 70.5
EL10Ac7g17373 Beta vulgaris HOM05D004182 ORTHO05D010127 8.8e-31 136.7 108 68.5
BcaC04g20783 Brassica carinata HOM05D004182 ORTHO05D010127 7.0e-28 127.1 100 69.0
arahy.Tifrunner.gnm1.ann1.WY6BZE Arachis hypogaea HOM05D004182 ORTHO05D010127 1.4e-23 112.8 109 58.7
C04p22500 Brassica napus HOM05D004182 ORTHO05D010127 3.0e-23 111.7 90 67.8
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 1.8e-20 102.4 85 65.9
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.8e-20 102.4 85 65.9
BraSC59t46507Z Brassica rapa HOM05D004182 ORTHO05D010127 1.8e-20 102.4 85 65.9
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BolSC44t60815H Brassica oleracea HOM05D004182 ORTHO05D010127 2.4e-20 102.1 84 65.5
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BraSC103t45434Z Brassica rapa HOM05D004182 ORTHO05D010127 2.4e-20 102.1 84 65.5
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BraSC25t45903Z Brassica rapa HOM05D004182 ORTHO05D010127 2.4e-20 102.1 84 65.5
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 2.4e-20 102.1 84 65.5
Glyma.05G084375 Glycine max HOM05D004182 ORTHO05D010127 5.5e-17 90.9 101 51.5
Cpa.g.sc302.2 Carica papaya HOM05D001966 ORTHO05D010127 2.1e-16 89.0 49 89.8
Gohir.1Z050966 Gossypium hirsutum HOM05D001966 ORTHO05D010127 2.1e-16 89.0 49 89.8
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 3.6e-16 88.2 73 64.4
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 3.4e-14 81.6 49 83.7
Gohir.1Z049792 Gossypium hirsutum HOM05D001966 ORTHO05D010127 4.4e-14 81.3 78 59.0
Nn029s41582 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn031s41607 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn064s42219 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn212s45204 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn264s45948 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn304s46230 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn349s46476 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn403s46569 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn442s46689 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Nn4g25380 Nelumbo nucifera HOM05D001966 ORTHO05D010127 5.7e-14 80.9 49 83.7
Gohir.1Z050082 Gossypium hirsutum HOM05D001966 ORTHO05D010127 7.5e-14 80.5 83 56.6
Gohir.A04G039225 Gossypium hirsutum HOM05D001966 ORTHO05D010127 7.5e-14 80.5 83 56.6
TPR.G18363 Trifolium pratense HOM05D000107 ORTHO05D000062 7.5e-14 80.5 50 80.0
Nn6g32819 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.3e-13 79.7 49 79.6
BcaC04g22013 Brassica carinata HOM05D004182 ORTHO05D010127 1.1e-12 76.6 86 52.3
Gohir.A06G123204 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.4e-12 76.3 43 83.7
Hma1.2p1_0594F.1_g185814 Hydrangea macrophylla HOM05D004182 ORTHO05D010127 1.4e-12 76.3 44 79.5
Hma1.2p1_3221F.1_g334073 Hydrangea macrophylla HOM05D004182 ORTHO05D010127 1.4e-12 76.3 44 79.5
Nn1g00555 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.4e-12 76.3 49 75.5
Gohir.A01G139755 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.8e-12 75.9 43 83.7
Lsat_1_v5_gn_6_14561 Lactuca sativa HOM05D001966 ORTHO05D010127 2.4e-12 75.5 49 77.6
Gohir.A05G327708 Gossypium hirsutum HOM05D001966 ORTHO05D010127 3.1e-12 75.1 45 82.2
Lsat_1_v5_gn_6_14541 Lactuca sativa HOM05D001966 ORTHO05D010127 5.4e-12 74.3 45 82.2
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 7.0e-12 73.9 43 83.7
Gohir.D01G134240 Gossypium hirsutum HOM05D001966 ORTHO05D010127 9.2e-12 73.6 61 63.9
Nitab4.5_0006306g0030 Nicotiana tabacum HOM05D001966 ORTHO05D010127 9.2e-12 73.6 51 74.5
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 1.2e-11 73.2 42 78.6
FAN13G1592 Fragaria x ananassa HOM05D001966 ORTHO05D010127 1.2e-11 73.2 89 49.4
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 1.2e-11 73.2 96 46.9
BraSC59t46527Z Brassica rapa HOM05D004182 ORTHO05D010127 1.6e-11 72.8 68 58.8
arahy.Tifrunner.gnm1.ann1.CV40CV Arachis hypogaea HOM05D001966 ORTHO05D010127 2.0e-11 72.4 42 78.6
Peaxi162Scf01071g00036 Petunia axillaris HOM05D001966 ORTHO05D010127 4.5e-11 71.2 77 55.8
arahy.Tifrunner.gnm1.ann1.UVG9XA Arachis hypogaea HOM05D001966 ORTHO05D010127 7.8e-11 70.5 43 79.1
Gorai.007G326200 Gossypium raimondii HOM05D001966 ORTHO05D010127 1.0e-10 70.1 43 81.4
arahy.Tifrunner.gnm1.ann1.CSY78X Arachis hypogaea HOM05D000216 ORTHO05D000634 1.3e-10 69.7 42 76.2
Gohir.D11G306003 Gossypium hirsutum HOM05D001966 ORTHO05D010127 2.9e-10 68.6 43 81.4
SEGI_11050 Sequoiadendron giganteum HOM05D004182 ORTHO05D010127 3.8e-10 68.2 45 71.1
SEGI_32360 Sequoiadendron giganteum HOM05D004182 ORTHO05D010127 6.6e-10 67.4 44 70.5
arahy.Tifrunner.gnm1.ann1.SGU002 Arachis hypogaea HOM05D000213 ORTHO05D000426 8.6e-10 67.0 78 53.8
Gorai.002G166100 Gossypium raimondii HOM05D001966 ORTHO05D010127 1.5e-09 66.2 41 78.0
Gorai.011G180000 Gossypium raimondii HOM05D001966 ORTHO05D010127 1.9e-09 65.9 43 76.7
Nitab4.5_0018109g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010127 1.9e-09 65.9 67 59.7
Peaxi162Scf00263g00168 Petunia axillaris HOM05D001966 ORTHO05D010127 5.6e-09 64.3 41 78.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.1e-08 62.4 50 68.0
Sopen03g036740 Solanum pennellii HOM05D001966 ORTHO05D010127 6.1e-08 60.8 38 76.3
Phvul.008G246600 Phaseolus vulgaris HOM05D001966 ORTHO05D010127 1.4e-07 59.7 43 72.1
Oeu012760.1 Olea europaea HOM05D001966 ORTHO05D010127 1.2e-06 56.6 39 74.4
Gorai.007G150800 Gossypium raimondii HOM05D001966 ORTHO05D010127 3.4e-06 55.1 68 51.5


User provided reference genes

Program Settings