Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc200.35 Carica papaya HOM05D000533 ORTHO05D001069 2.8e-48 194.9 94 100.0
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 5.8e-30 134.0 100 71.0
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 9.9e-30 133.3 100 71.0
Oeu013777.2 Olea europaea HOM05D000533 ORTHO05D001069 9.9e-30 133.3 100 71.0
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-29 132.5 100 71.0
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 1.7e-29 132.5 100 71.0
GSVIVG01004958001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.7e-29 132.5 100 71.0
Aqoxy4G01612 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 4.9e-29 131.0 100 70.0
GSVIVG01006220001 Vitis vinifera HOM05D000533 ORTHO05D001069 6.4e-29 130.6 98 71.4
MSTRG.26041 Avicennia marina HOM05D000533 ORTHO05D001069 8.4e-29 130.2 100 70.0
CAN.G1632.17 Capsicum annuum HOM05D000533 ORTHO05D001069 8.4e-29 130.2 100 70.0
Peaxi162Scf03098g00003 Petunia axillaris HOM05D000533 ORTHO05D001069 8.4e-29 130.2 100 70.0
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 2.5e-28 128.6 100 69.0
Peaxi162Scf00197g00026 Petunia axillaris HOM05D000533 ORTHO05D001069 2.5e-28 128.6 104 68.3
Solyc00g500185.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.5e-28 128.6 104 68.3
CAN.G4.19 Capsicum annuum HOM05D000533 ORTHO05D001069 3.2e-28 128.3 100 69.0
Lsat_1_v5_gn_7_99760 Lactuca sativa HOM05D000533 ORTHO05D001069 3.2e-28 128.3 96 70.8
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 3.2e-28 128.3 101 69.3
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 3.2e-28 128.3 101 69.3
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 4.2e-28 127.9 100 69.0
Lsat_1_v5_gn_4_123980 Lactuca sativa HOM05D000533 ORTHO05D001069 7.1e-28 127.1 96 70.8
Aqoxy3G01139 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
arahy.Tifrunner.gnm1.ann1.0LI3ZC Arachis hypogaea HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
arahy.Tifrunner.gnm1.ann1.VAXL0Q Arachis hypogaea HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
arahy.Tifrunner.gnm1.ann1.WT8VJC Arachis hypogaea HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
HanXRQChr04g0109061 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
HanXRQChr14g0434361 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
Lsat_1_v5_gn_5_152661 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
Lsat_1_v5_gn_7_25900 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
Lalb_Chr00c24g0407281 Lupinus albus HOM05D000533 ORTHO05D001069 1.2e-27 126.3 96 70.8
Aa31csc1081G30 Aethionema arabicum HOM05D000533 ORTHO05D001069 1.6e-27 125.9 85 74.1
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 2.1e-27 125.6 66 90.9
Glyma.15G187666 Glycine max HOM05D000533 ORTHO05D001069 2.7e-27 125.2 96 69.8
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.6e-27 124.4 100 68.0
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 4.6e-27 124.4 97 69.1
Sopen05g012880 Solanum pennellii HOM05D000533 ORTHO05D001069 6.0e-27 124.0 96 69.8
unitig_87.g27982 Utricularia gibba HOM05D000533 ORTHO05D001069 6.0e-27 124.0 96 69.8
BraSC48t46305Z Brassica rapa HOM05D000533 ORTHO05D001069 1.0e-26 123.2 66 89.4
Cfa023036 Carpinus fangiana HOM05D000533 ORTHO05D001069 1.0e-26 123.2 96 69.8
Glyma.15G188000 Glycine max HOM05D000533 ORTHO05D001069 1.0e-26 123.2 96 68.8
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 1.8e-26 122.5 66 89.4
DCAR_032449 Daucus carota HOM05D000533 ORTHO05D001069 1.8e-26 122.5 66 89.4
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.1e-26 120.9 100 66.0
Ah.10g028350 Amaranthus hybridus HOM05D000533 ORTHO05D001069 6.7e-26 120.6 93 69.9
arahy.Tifrunner.gnm1.ann1.1S94M9 Arachis hypogaea HOM05D000533 ORTHO05D001069 6.7e-26 120.6 93 69.9
arahy.Tifrunner.gnm1.ann1.PQN9HV Arachis hypogaea HOM05D000533 ORTHO05D001069 6.7e-26 120.6 93 69.9
arahy.Tifrunner.gnm1.ann1.WRNL5Y Arachis hypogaea HOM05D000533 ORTHO05D001069 6.7e-26 120.6 93 69.9
AUR62043914 Chenopodium quinoa HOM05D000533 ORTHO05D001069 6.7e-26 120.6 93 69.9
CAN.G267.14 Capsicum annuum HOM05D000533 ORTHO05D001069 8.7e-26 120.2 66 87.9
Aqoxy7G01636 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 1.5e-25 119.4 66 86.4
SHI52562 Sapria himalayana HOM05D000533 ORTHO05D001069 1.9e-25 119.0 66 87.9
Nitab4.5_0002287g0110 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.5e-25 118.6 94 68.1
Sed0022170 Sechium edule HOM05D000533 ORTHO05D001069 2.5e-25 118.6 95 68.4
arahy.Tifrunner.gnm1.ann1.C1VVMY Arachis hypogaea HOM05D000533 ORTHO05D001069 3.3e-25 118.2 93 68.8
RhsimMtG0002000 Rhododendron simsii HOM05D000533 ORTHO05D001069 3.3e-25 118.2 93 68.8
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 5.6e-25 117.5 66 84.8
SHI29300 Sapria himalayana HOM05D000533 ORTHO05D001069 9.6e-25 116.7 78 74.4
SEGI_08012 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 9.6e-25 116.7 66 84.8
Solyc01g065810.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.6e-25 116.7 100 63.0
Nitab4.5_0002418g0130 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.2e-24 113.6 97 63.9
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-23 113.2 69 79.7
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-23 113.2 69 79.7
Sopen05g012870 Solanum pennellii HOM05D000533 ORTHO05D001069 1.4e-23 112.8 96 65.6
Nitab4.5_0008578g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.0e-23 111.3 66 80.3
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 2.6e-22 108.6 89 65.2
Ca_26708_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 2.6e-22 108.6 89 65.2
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 2.6e-22 108.6 66 81.8
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 2.6e-22 108.6 66 81.8
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.6e-22 108.6 66 81.8
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 2.6e-22 108.6 66 81.8
Cpa.g.sc263.15 Carica papaya HOM05D000533 ORTHO05D001069 5.8e-22 107.5 85 68.2
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 5.8e-22 107.5 66 78.8
arahy.Tifrunner.gnm1.ann1.VVPQ8E Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-21 106.3 103 59.2
SMO053G0001 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 1.7e-21 105.9 66 78.8
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 2.9e-21 105.1 66 78.8
SabraMtG0006500 Salix brachista HOM05D000533 ORTHO05D001069 2.9e-21 105.1 84 67.9
Sp3g25560 Schrenkiella parvula HOM05D000533 ORTHO05D001069 2.9e-21 105.1 84 67.9
Solyc12g036590.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.9e-21 105.1 74 71.6
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.9e-21 104.4 52 94.2
A04p09580 Brassica napus HOM05D000533 ORTHO05D001069 8.4e-21 103.6 90 63.3
BolSC28t60324H Brassica oleracea HOM05D000533 ORTHO05D001069 8.4e-21 103.6 90 63.3
BolSC28t60426H Brassica oleracea HOM05D000533 ORTHO05D001069 8.4e-21 103.6 90 63.3
Nitab4.5_0008916g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-20 103.2 56 87.5
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.4e-20 102.8 87 64.4
Nitab4.5_0000172g0890 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-20 102.8 63 81.0
Nitab4.5_0008293g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-20 102.8 92 59.8
CAN.G811.5 Capsicum annuum HOM05D000533 ORTHO05D001069 1.9e-20 102.4 100 59.0
Nitab4.5_0001153g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.5e-20 102.1 62 80.6
CsaV3_UNG208550 Cucumis sativus L. HOM05D000533 ORTHO05D001069 4.2e-20 101.3 91 64.8
C01p34650 Brassica napus HOM05D000533 ORTHO05D001069 7.1e-20 100.5 90 62.2
Nitab4.5_0001152g0630 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.5e-19 98.2 94 58.5
Nitab4.5_0000623g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.0e-19 97.4 86 61.6
Nitab4.5_0006806g0150 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.0e-19 97.4 84 64.3
SHI25676 Sapria himalayana HOM05D000533 ORTHO05D001069 1.3e-18 96.3 55 80.0
Nitab4.5_0012067g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.8e-18 95.9 60 78.3
CAN.G1.13 Capsicum annuum HOM05D000533 ORTHO05D001069 2.3e-18 95.5 75 61.3
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 8.7e-18 93.6 83 63.9
Thecc.08G163000 Theobroma cacao HOM05D000533 ORTHO05D001069 1.9e-17 92.4 90 58.9
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 4.3e-17 91.3 62 72.6
SHI11894 Sapria himalayana HOM05D000533 ORTHO05D001069 7.4e-17 90.5 69 68.1
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 8.2e-16 87.0 66 60.6
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 2.4e-15 85.5 62 66.1
COL.COLO4_01459 Corchorus olitorius HOM05D000533 ORTHO05D001069 2.4e-15 85.5 66 65.2
SHI17974 Sapria himalayana HOM05D000533 ORTHO05D001069 3.1e-15 85.1 56 75.0
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 9.0e-15 83.6 62 61.3
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 1.2e-14 83.2 66 57.6
TPR.G29698 Trifolium pratense HOM05D000533 ORTHO05D001069 5.0e-13 77.8 69 63.8
Nitab4.5_0001649g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-12 76.6 43 81.4
ClCG08G009690 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.9e-12 75.9 38 92.1
arahy.Tifrunner.gnm1.ann1.ELH4X7 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.0e-10 68.6 65 60.0
Nitab4.5_0001919g0100 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.7e-09 64.3 69 55.1
Mapoly0048s0043 Marchantia polymorpha HOM05D000533 ORTHO05D001069 7.4e-09 63.9 62 48.4
Eucgr.K01620 Eucalyptus grandis HOM05D000533 ORTHO05D001069 9.7e-09 63.5 62 48.4
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BolSC29t60550H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BolSC44t60826H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 1.3e-08 63.2 62 48.4
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 1.7e-08 62.8 62 46.8
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 2.2e-08 62.4 62 48.4
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 46.8
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 46.8
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 46.8
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 46.8
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 2.8e-08 62.0 62 48.4
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 48.4
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 3.7e-08 61.6 62 46.8
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
HanXRQChr09g0251511 Helianthus annuus HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
Nn1g08632 Nelumbo nucifera HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 6.3e-08 60.8 62 46.8
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 8.2e-08 60.5 62 46.8
Gohir.D04G096580 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.1e-07 60.1 62 45.2
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 1.8e-07 59.3 62 45.2
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 6.9e-07 57.4 61 44.3
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 6.9e-07 57.4 66 40.9
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 9.1e-07 57.0 62 43.5
SEGI_41539 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 9.1e-07 57.0 62 43.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.2e-06 56.6 60 45.0
C02p28810 Brassica napus HOM05D000533 ORTHO05D001069 1.5e-06 56.2 62 46.8
Solyc09g031577.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.5e-06 56.2 73 46.6
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 3.4e-06 55.1 62 43.5
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 4.5e-06 54.7 62 43.5
CAN.G993.11 Capsicum annuum HOM05D000533 ORTHO05D001069 5.9e-06 54.3 69 49.3
Nitab4.5_0007400g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.9e-06 54.3 61 44.3
SHI32387 Sapria himalayana HOM05D000533 ORTHO05D001069 5.9e-06 54.3 37 70.3


User provided reference genes

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