Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc180.10 Carica papaya HOM05D001758 ORTHO05D017200 1.2e-55 219.5 108 100.0
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 9.9e-50 199.9 106 88.7
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.3e-49 199.5 106 86.8
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.3e-49 199.5 106 87.7
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 2.2e-49 198.7 106 88.7
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 2.9e-49 198.4 106 86.8
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 6.4e-49 197.2 105 87.6
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 6.4e-49 197.2 106 87.7
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 1.4e-48 196.1 106 85.8
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 4.2e-48 194.5 105 84.8
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 7.1e-48 193.7 106 84.9
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 1.2e-47 193.0 106 84.0
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 3.5e-47 191.4 106 84.0
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 3.5e-47 191.4 106 84.0
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 3.5e-47 191.4 106 83.0
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 7.9e-47 190.3 106 84.9
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 7.9e-47 190.3 106 83.0
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 1.3e-46 189.5 105 83.8
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 1.8e-46 189.1 106 84.0
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 1.8e-46 189.1 106 84.0
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 81.1
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 81.1
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 81.1
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 81.1
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 81.1
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 2.3e-46 188.7 106 82.1
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 2.3e-46 188.7 105 81.0
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 3.0e-46 188.3 106 82.1
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 3.0e-46 188.3 106 81.1
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 5.1e-46 187.6 106 83.0
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 5.1e-46 187.6 106 82.1
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 5.1e-46 187.6 105 82.9
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 5.1e-46 187.6 106 83.0
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 8.7e-46 186.8 106 82.1
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 8.7e-46 186.8 106 81.1
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 1.1e-45 186.4 105 83.8
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.1e-45 186.4 108 80.6
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 1.1e-45 186.4 105 82.9
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 1.9e-45 185.7 105 81.9
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 1.9e-45 185.7 106 80.2
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 1.9e-45 185.7 106 80.2
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.5e-45 185.3 105 82.9
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 3.3e-45 184.9 108 79.6
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 3.3e-45 184.9 106 80.2
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.3e-45 184.5 106 80.2
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 4.3e-45 184.5 106 82.1
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 4.3e-45 184.5 106 82.1
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 5.6e-45 184.1 106 80.2
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 5.6e-45 184.1 106 81.1
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 5.6e-45 184.1 106 79.2
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 5.6e-45 184.1 106 81.1
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 7.4e-45 183.7 106 81.1
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 7.4e-45 183.7 106 81.1
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 9.6e-45 183.3 106 80.2
Actinidia27374 Actinidia chinensis HOM05D001758 ORTHO05D004430 1.3e-44 183.0 106 79.2
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 1.3e-44 183.0 105 79.0
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 1.6e-44 182.6 106 78.3
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 2.1e-44 182.2 106 80.2
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 2.1e-44 182.2 106 79.2
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 2.1e-44 182.2 106 78.3
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 2.1e-44 182.2 106 81.1
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 2.8e-44 181.8 106 79.2
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.7e-44 181.4 106 77.4
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 3.7e-44 181.4 105 78.1
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 3.7e-44 181.4 106 79.2
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 4.8e-44 181.0 106 79.2
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 4.8e-44 181.0 106 79.2
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 6.2e-44 180.6 106 79.2
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 8.2e-44 180.3 108 75.9
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 8.2e-44 180.3 100 82.0
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 1.1e-43 179.9 106 79.2
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 1.4e-43 179.5 106 78.3
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 1.4e-43 179.5 106 78.3
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 2.4e-43 178.7 106 77.4
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 3.1e-43 178.3 106 78.3
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 3.1e-43 178.3 106 78.3
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 5.3e-43 177.6 106 76.4
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 5.3e-43 177.6 106 76.4
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 5.3e-43 177.6 106 78.3
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 5.3e-43 177.6 106 77.4
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 6.9e-43 177.2 106 78.3
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 6.9e-43 177.2 106 75.5
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 6.9e-43 177.2 106 78.3
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 6.9e-43 177.2 105 79.0
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 9.0e-43 176.8 106 79.2
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 9.0e-43 176.8 105 78.1
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 9.0e-43 176.8 106 74.5
BcaNung01436 Brassica carinata HOM05D001758 ORTHO05D017200 1.2e-42 176.4 108 74.1
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 1.2e-42 176.4 108 74.1
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.2e-42 176.4 106 76.4
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 1.2e-42 176.4 106 78.3
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.5e-42 176.0 106 77.4
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 2.6e-42 175.3 106 74.5
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 3.4e-42 174.9 106 76.4
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 3.4e-42 174.9 106 76.4
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 3.4e-42 174.9 106 74.5
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 4.5e-42 174.5 106 76.4
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 5.8e-42 174.1 106 74.5
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 7.6e-42 173.7 100 79.0
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 1.0e-41 173.3 106 73.6
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 1.3e-41 172.9 106 73.6
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 1.3e-41 172.9 106 75.5
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.3e-41 172.9 106 74.5
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 1.7e-41 172.6 106 74.5
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 2.2e-41 172.2 106 73.6
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 2.2e-41 172.2 99 82.8
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 3.8e-41 171.4 106 74.5
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 4.9e-41 171.0 106 74.5
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 4.9e-41 171.0 106 72.6
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.5e-41 170.6 106 73.6
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 1.1e-40 169.9 104 76.9
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 3.2e-40 168.3 106 72.6
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 3.2e-40 168.3 106 72.6
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 3.2e-40 168.3 106 72.6
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 4.2e-40 167.9 106 73.6
unitig_62.g23540 Utricularia gibba HOM05D001758 ORTHO05D017200 4.2e-40 167.9 106 72.6
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 4.2e-40 167.9 106 72.6
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 7.1e-40 167.2 106 72.6
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 7.1e-40 167.2 105 71.4
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 7.1e-40 167.2 105 75.2
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 1.2e-39 166.4 106 70.8
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 2.1e-39 165.6 106 70.8
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 2.1e-39 165.6 106 70.8
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 2.1e-39 165.6 106 70.8
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 2.7e-39 165.2 106 73.6
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 6.0e-39 164.1 106 68.9
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.0e-38 163.3 106 67.9
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 1.0e-38 163.3 106 69.8
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 3.9e-38 161.4 106 68.9
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 3.9e-38 161.4 106 67.9
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.1e-37 159.8 106 69.8
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 1.1e-37 159.8 106 68.9
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 1.9e-37 159.1 106 68.9
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 3.3e-37 158.3 106 67.9
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 9.7e-37 156.8 106 67.0
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 1.1e-35 153.3 106 65.1
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 3.1e-35 151.8 102 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 2.0e-34 149.1 108 63.0
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 2.6e-34 148.7 108 63.0
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.7e-33 146.0 98 66.3
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.7e-33 146.0 108 60.2
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.7e-33 146.0 108 58.3
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 2.5e-32 142.1 108 60.2
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 1.4e-30 136.3 110 60.9
HanXRQChr05g0145951 Helianthus annuus HOM05D001758 ORTHO05D017200 3.0e-30 135.2 84 72.6
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 3.9e-30 134.8 108 57.4
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 6.7e-30 134.0 88 71.6
HanXRQChr16g0516131 Helianthus annuus HOM05D001758 ORTHO05D017200 2.5e-29 132.1 84 71.4
VMungo1215G0906 Vigna mungo HOM05D001758 ORTHO05D017200 2.8e-28 128.6 91 70.3
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 1.4e-27 126.3 107 52.3
BcaNung04479 Brassica carinata HOM05D001758 ORTHO05D017200 1.1e-24 116.7 66 81.8
Actinidia27143 Actinidia chinensis HOM05D001758 ORTHO05D017200 1.4e-22 109.8 98 57.1
Lj2A182G27 Lonicera japonica HOM05D001758 ORTHO05D017200 6.1e-15 84.3 100 47.0
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 5.2e-06 54.7 109 32.1


User provided reference genes

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