Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc170.53 Carica papaya HOM05D002650 ORTHO05D002924 9.7e-82 307.0 182 100.0
Cfa007541 Carpinus fangiana HOM05D002650 ORTHO05D002924 1.6e-55 219.9 122 85.2
Haze_14545 Corylus avellana HOM05D002650 ORTHO05D002924 2.0e-55 219.5 122 85.2
Sed0002537 Sechium edule HOM05D002650 ORTHO05D002924 2.3e-54 216.1 123 84.6
QL01p016137 Quercus lobata HOM05D002650 ORTHO05D002924 3.0e-54 215.7 122 84.4
QL11p025200 Quercus lobata HOM05D002650 ORTHO05D002924 3.0e-54 215.7 122 84.4
Ciclev10011090m.g Citrus clementina HOM05D002650 ORTHO05D002924 1.5e-53 213.4 122 83.6
Sc07g0004540 Simmondsia chinensis HOM05D002650 ORTHO05D002924 2.5e-53 212.6 122 84.4
Sc07g0004550 Simmondsia chinensis HOM05D002650 ORTHO05D002924 2.5e-53 212.6 122 84.4
Eucgr.E04299 Eucalyptus grandis HOM05D002650 ORTHO05D002924 9.5e-53 210.7 122 81.1
TAR629G2089 Trochodendron aralioides HOM05D002650 ORTHO05D002924 1.6e-52 209.9 119 84.0
TAR629G3266 Trochodendron aralioides HOM05D002650 ORTHO05D002924 1.6e-52 209.9 119 84.0
EL10Ac6g14001 Beta vulgaris HOM05D002650 ORTHO05D002924 2.1e-52 209.5 122 82.0
Gohir.D09G015700 Gossypium hirsutum HOM05D002650 ORTHO05D002924 2.1e-52 209.5 123 81.3
Gorai.006G017900 Gossypium raimondii HOM05D002650 ORTHO05D002924 2.1e-52 209.5 123 81.3
QL12p000968 Quercus lobata HOM05D002650 ORTHO05D002924 2.1e-52 209.5 122 81.1
Peaxi162Scf00464g00317 Petunia axillaris HOM05D002650 ORTHO05D002924 2.8e-52 209.1 122 82.8
Hund15391 Selenicereus undatus HOM05D002650 ORTHO05D002924 3.6e-52 208.8 122 81.1
TWI60G0183 Tripterygium wilfordii HOM05D002650 ORTHO05D002924 3.6e-52 208.8 123 80.5
Manes.01G090100 Manihot esculenta HOM05D002650 ORTHO05D002924 4.7e-52 208.4 122 82.8
Thecc.04G080400 Theobroma cacao HOM05D002650 ORTHO05D002924 6.2e-52 208.0 123 78.9
Nitab4.5_0006562g0040 Nicotiana tabacum HOM05D002650 ORTHO05D002924 1.0e-51 207.2 122 81.1
PGR142G0615 Punica granatum HOM05D002650 ORTHO05D002924 1.8e-51 206.5 119 82.4
ATR0564G515 Amborella trichopoda HOM05D002650 ORTHO05D002924 2.3e-51 206.1 122 80.3
Actinidia06482 Actinidia chinensis HOM05D002650 ORTHO05D002924 3.1e-51 205.7 123 79.7
CiPaw.04G017900 Carya illinoinensis HOM05D002650 ORTHO05D002924 4.0e-51 205.3 121 83.5
MELO3C021203.2 Cucumis melo HOM05D002650 ORTHO05D002924 4.0e-51 205.3 122 79.5
RcHm_v2.0_Chr2g0168661 Rosa chinensis HOM05D002650 ORTHO05D002924 4.0e-51 205.3 122 78.7
Solyc11g011460.2 Solanum lycopersicum HOM05D002650 ORTHO05D002924 4.0e-51 205.3 122 81.1
Sopen11g006250 Solanum pennellii HOM05D002650 ORTHO05D002924 4.0e-51 205.3 122 81.1
Oeu005234.1 Olea europaea HOM05D002650 ORTHO05D002924 5.2e-51 204.9 120 83.3
Rhsim10G0180200 Rhododendron simsii HOM05D002650 ORTHO05D002924 5.2e-51 204.9 118 83.1
Dinv19048 Davidia involucrata HOM05D002650 ORTHO05D002924 6.8e-51 204.5 122 78.7
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 8.9e-51 204.1 120 80.0
Migut.D02453 Erythranthe guttata HOM05D002650 ORTHO05D002924 8.9e-51 204.1 123 79.7
Nitab4.5_0011135g0030 Nicotiana tabacum HOM05D002650 ORTHO05D002924 8.9e-51 204.1 122 80.3
PGSC0003DMG400013241 Solanum tuberosum HOM05D002650 ORTHO05D002924 8.9e-51 204.1 122 80.3
Gohir.A09G017050 Gossypium hirsutum HOM05D002650 ORTHO05D002924 1.2e-50 203.8 123 79.7
Actinidia26587 Actinidia chinensis HOM05D002650 ORTHO05D002924 1.5e-50 203.4 123 78.9
CsaV3_6G000630 Cucumis sativus L. HOM05D002650 ORTHO05D002924 1.5e-50 203.4 122 78.7
Lj4P259T23 Lonicera japonica HOM05D002650 ORTHO05D002924 1.5e-50 203.4 123 78.9
MBI05_g08280_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.5e-50 203.4 122 78.7
MBI06_g06491_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.5e-50 203.4 122 78.7
vmacro20586 Vaccinium macrocarpon HOM05D002650 ORTHO05D002924 1.5e-50 203.4 123 78.0
HanXRQChr07g0191751 Helianthus annuus HOM05D002650 ORTHO05D002924 2.0e-50 203.0 118 81.4
HanXRQChr16g0529961 Helianthus annuus HOM05D002650 ORTHO05D002924 2.6e-50 202.6 118 81.4
FvH4_6g26790 Fragaria vesca HOM05D002650 ORTHO05D002924 3.4e-50 202.2 122 77.0
FAN14G0746 Fragaria x ananassa HOM05D002650 ORTHO05D002924 3.4e-50 202.2 122 77.0
SHI06833 Sapria himalayana HOM05D002650 ORTHO05D002924 3.4e-50 202.2 119 80.7
ECA238G2441 Erigeron canadensis HOM05D002650 ORTHO05D002924 4.4e-50 201.8 118 80.5
FAN05G0367 Fragaria x ananassa HOM05D002650 ORTHO05D002924 4.4e-50 201.8 122 77.0
Duzib147G0083 Durio zibethinus HOM05D002650 ORTHO05D002924 5.8e-50 201.4 122 77.0
CARHR262390 Cardamine hirsuta HOM05D002650 ORTHO05D002924 7.5e-50 201.1 119 79.8
Prupe.3G268500 Prunus persica HOM05D002650 ORTHO05D002924 7.5e-50 201.1 120 80.0
Cc07_g13230 Coffea canephora HOM05D002650 ORTHO05D002924 9.8e-50 200.7 118 81.4
Atru.chr8.143 Acer truncatum HOM05D002650 ORTHO05D002924 1.3e-49 200.3 122 77.9
Aa31LG9G16330 Aethionema arabicum HOM05D002650 ORTHO05D002924 1.3e-49 200.3 122 78.7
Sp7g02220 Schrenkiella parvula HOM05D002650 ORTHO05D002924 1.3e-49 200.3 119 79.8
CAN.G222.61 Capsicum annuum HOM05D002650 ORTHO05D002924 1.7e-49 199.9 120 80.8
Migut.D02508 Erythranthe guttata HOM05D002650 ORTHO05D002924 1.7e-49 199.9 119 79.8
Thhalv10027648m.g Eutrema salsugineum HOM05D002650 ORTHO05D002924 1.7e-49 199.9 119 79.8
Oeu064759.1 Olea europaea HOM05D002650 ORTHO05D002924 1.7e-49 199.9 123 79.7
FAN02G3124 Fragaria x ananassa HOM05D002650 ORTHO05D002924 2.9e-49 199.1 122 75.4
BcaB06g27380 Brassica carinata HOM05D002650 ORTHO05D002924 3.7e-49 198.7 119 79.8
A04p12540 Brassica napus HOM05D002650 ORTHO05D002924 3.7e-49 198.7 119 79.8
C04p46280 Brassica napus HOM05D002650 ORTHO05D002924 3.7e-49 198.7 119 79.8
BraA04t16915Z Brassica rapa HOM05D002650 ORTHO05D002924 3.7e-49 198.7 119 79.8
DCAR_001980 Daucus carota HOM05D002650 ORTHO05D002924 8.3e-49 197.6 123 76.4
BolC4t26212H Brassica oleracea HOM05D002650 ORTHO05D002924 1.1e-48 197.2 119 79.0
Glyma.13G063500 Glycine max HOM05D002650 ORTHO05D002924 1.1e-48 197.2 118 77.1
Psat1g074520 Pisum sativum HOM05D002650 ORTHO05D002924 1.1e-48 197.2 118 78.8
CANSAT64G1048 Cannabis sativa HOM05D002650 ORTHO05D002924 1.4e-48 196.8 122 74.6
Lsat_1_v5_gn_2_68300 Lactuca sativa HOM05D002650 ORTHO05D002924 1.4e-48 196.8 118 79.7
SGA_v2.0_scaffold21G09475 Striga asiatica HOM05D002650 ORTHO05D002924 1.4e-48 196.8 118 78.8
AL7G50400 Arabidopsis lyrata HOM05D002650 ORTHO05D002924 2.4e-48 196.1 119 78.2
FvH4_7g07700 Fragaria vesca HOM05D002650 ORTHO05D002924 2.4e-48 196.1 122 74.6
Phvul.004G028100 Phaseolus vulgaris HOM05D002650 ORTHO05D002924 3.2e-48 195.7 118 78.0
TPR.G21390 Trifolium pratense HOM05D002650 ORTHO05D002924 3.2e-48 195.7 118 78.8
TPR.G3004 Trifolium pratense HOM05D002650 ORTHO05D002924 4.1e-48 195.3 118 77.1
arahy.Tifrunner.gnm1.ann1.KZ49VN Arachis hypogaea HOM05D002650 ORTHO05D002924 9.2e-48 194.1 118 78.0
MD17G1050500 Malus domestica HOM05D002650 ORTHO05D002924 1.6e-47 193.4 120 75.8
arahy.Tifrunner.gnm1.ann1.J8Q99B Arachis hypogaea HOM05D002650 ORTHO05D002924 2.0e-47 193.0 118 78.0
AUR62032466 Chenopodium quinoa HOM05D002650 ORTHO05D002924 2.0e-47 193.0 118 76.3
Medtr6g011800 Medicago truncatula HOM05D002650 ORTHO05D002924 2.0e-47 193.0 118 78.0
Ca_20736_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 2.7e-47 192.6 118 77.1
Lj2g0025076 Lotus japonicus HOM05D002650 ORTHO05D002924 2.7e-47 192.6 118 77.1
Sabra17G0072900 Salix brachista HOM05D002650 ORTHO05D002924 3.5e-47 192.2 119 78.2
FAN06G5007 Fragaria x ananassa HOM05D002650 ORTHO05D002924 4.6e-47 191.8 122 73.8
Potri.017G081900 Populus trichocarpa HOM05D002650 ORTHO05D002924 4.6e-47 191.8 119 78.2
Lalb_Chr02g0159671 Lupinus albus HOM05D002650 ORTHO05D002924 7.8e-47 191.0 118 74.6
Carub.0007s3589 Capsella rubella HOM05D002650 ORTHO05D002924 1.0e-46 190.7 119 74.8
AUR62044728 Chenopodium quinoa HOM05D002650 ORTHO05D002924 1.7e-46 189.9 118 75.4
Glyma.19G021800 Glycine max HOM05D002650 ORTHO05D002924 1.7e-46 189.9 118 73.7
HPP92_004328 Vanilla planifolia HOM05D002650 ORTHO05D002924 1.7e-46 189.9 122 73.8
Os04g0459800 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 3.0e-46 189.1 122 73.0
PSO832G1866 Papaver somniferum HOM05D002650 ORTHO05D002924 3.0e-46 189.1 121 76.9
Aqoxy3G00648 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 3.9e-46 188.7 122 71.3
AT5G39840 Arabidopsis thaliana HOM05D002650 ORTHO05D002924 5.0e-46 188.3 119 75.6
PSO675G8623 Papaver somniferum HOM05D002650 ORTHO05D002924 8.6e-46 187.6 118 77.1
VMungo0464G0369 Vigna mungo HOM05D002650 ORTHO05D002924 1.5e-45 186.8 118 72.9
CDE07G1280 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 3.3e-45 185.7 122 70.5
Aqoxy3G03365 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 5.6e-45 184.9 119 73.1
Zm00001eb080820 Zea mays HOM05D002650 ORTHO05D002924 5.6e-45 184.9 119 73.1
CDE04G1324 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 1.6e-44 183.3 119 71.4
unitig_736.g22345 Utricularia gibba HOM05D002650 ORTHO05D002924 1.1e-43 180.6 122 69.7
SEGI_33056 Sequoiadendron giganteum HOM05D002650 ORTHO05D002924 3.4e-42 175.6 123 67.5
Mapoly0052s0044 Marchantia polymorpha HOM05D002650 ORTHO05D002924 1.5e-34 150.2 119 61.3
Zm00001eb424140 Zea mays HOM05D002650 ORTHO05D002924 6.4e-33 144.8 118 56.8
Zm00001eb424180 Zea mays HOM05D002650 ORTHO05D002924 6.4e-33 144.8 118 56.8
Pp3c11_24680 Physcomitrium patens HOM05D002650 ORTHO05D002924 2.1e-31 139.8 119 58.0
AagrBONN_evm.TU.Sc2ySwM_117.4074 Anthoceros agrestis HOM05D002650 ORTHO05D002924 2.7e-31 139.4 108 65.7
SMO356G0765 Selaginella moellendorffii HOM05D002650 ORTHO05D002924 1.7e-30 136.7 107 59.8
FAN03G1187 Fragaria x ananassa HOM05D002650 ORTHO05D002924 6.6e-30 134.8 91 69.2
Lj4C412G7 Lonicera japonica HOM05D002650 ORTHO05D002924 4.7e-28 128.6 84 71.4
Nitab4.5_0001048g0080 Nicotiana tabacum HOM05D002650 ORTHO05D002924 5.4e-24 115.2 85 67.1
CSS0028760 Camellia sinensis var. sinensis HOM05D002650 ORTHO05D002924 9.6e-13 77.8 35 100.0
Medtr3g013680 Medicago truncatula HOM05D002650 ORTHO05D002924 2.1e-12 76.6 62 64.5
CBR_g36977 Chara braunii HOM05D002650 ORTHO05D002924 2.8e-12 76.3 96 42.7
Duzib052G0834 Durio zibethinus HOM05D002650 ORTHO05D002924 7.6e-10 68.2 116 37.1
Zm00001eb057040 Zea mays HOM05D002650 ORTHO05D002924 1.3e-09 67.4 115 33.0
CAN.G1476.5 Capsicum annuum HOM05D002650 ORTHO05D002924 8.4e-09 64.7 120 33.3
HanXRQChr04g0100821 Helianthus annuus HOM05D002650 ORTHO05D002924 1.1e-08 64.3 30 93.3
Atru.chr4.2421 Acer truncatum HOM05D002650 ORTHO05D002924 1.4e-08 63.9 110 33.6
Os03g0746500 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 1.4e-08 63.9 115 32.2
Cc03_g04080 Coffea canephora HOM05D002650 ORTHO05D002924 1.9e-08 63.5 119 34.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.4e-08 63.2 120 34.2
MD13G1197200 Malus domestica HOM05D002650 ORTHO05D002924 2.4e-08 63.2 116 34.5
PRCOL_00000719 Prasinoderma coloniale HOM05D002650 ORTHO05D002924 2.4e-08 63.2 115 33.9
GSVIVG01011395001 Vitis vinifera HOM05D002650 ORTHO05D002924 2.4e-08 63.2 45 62.2
Nitab4.5_0000085g0370 Nicotiana tabacum HOM05D002650 ORTHO05D002924 3.2e-08 62.8 119 32.8
Prupe.1G018300 Prunus persica HOM05D002650 ORTHO05D002924 3.2e-08 62.8 116 32.8
Nn1g02387 Nelumbo nucifera HOM05D002650 ORTHO05D002924 4.2e-08 62.4 118 33.1
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 4.2e-08 62.4 116 34.5
Sabra10G0058900 Salix brachista HOM05D002650 ORTHO05D002924 9.3e-08 61.2 115 33.0
Gohir.D09G220400 Gossypium hirsutum HOM05D002650 ORTHO05D002924 1.2e-07 60.8 116 35.3
Gorai.006G241400 Gossypium raimondii HOM05D002650 ORTHO05D002924 1.2e-07 60.8 116 35.3
Sopen09g031260 Solanum pennellii HOM05D002650 ORTHO05D002924 1.2e-07 60.8 110 34.5
TAR362G0085 Trochodendron aralioides HOM05D002650 ORTHO05D002924 1.2e-07 60.8 116 31.9
AUR62042447 Chenopodium quinoa HOM05D002650 ORTHO05D002924 1.6e-07 60.5 118 30.5
AUR62033652 Chenopodium quinoa HOM05D002650 ORTHO05D002924 2.1e-07 60.1 110 30.9
Rhsim02G0027100 Rhododendron simsii HOM05D002650 ORTHO05D002924 2.1e-07 60.1 115 33.0
CSS0049240 Camellia sinensis var. sinensis HOM05D002650 ORTHO05D002924 2.7e-07 59.7 115 33.0
ClCG05G005000 Citrullus lanatus HOM05D002650 ORTHO05D002924 2.7e-07 59.7 118 33.1
LjContig00408g0012632 Lotus japonicus HOM05D002650 ORTHO05D002924 2.7e-07 59.7 116 32.8
Aqoxy5G00427 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 3.5e-07 59.3 116 31.9
Peaxi162Scf00092g00119 Petunia axillaris HOM05D002650 ORTHO05D002924 3.5e-07 59.3 119 31.9
arahy.Tifrunner.gnm1.ann1.4M845G Arachis hypogaea HOM05D002650 ORTHO05D002924 4.6e-07 58.9 110 32.7
arahy.Tifrunner.gnm1.ann1.K69D77 Arachis hypogaea HOM05D002650 ORTHO05D002924 4.6e-07 58.9 110 32.7
Ciclev10004646m.g Citrus clementina HOM05D002650 ORTHO05D002924 4.6e-07 58.9 118 32.2
CsaV3_3G013050 Cucumis sativus L. HOM05D002650 ORTHO05D002924 4.6e-07 58.9 119 30.3
Lj3A731G60 Lonicera japonica HOM05D002650 ORTHO05D002924 4.6e-07 58.9 109 33.0
Medtr3g013660 Medicago truncatula HOM05D002650 ORTHO05D267315 4.6e-07 58.9 117 34.2
Psat2g190360 Pisum sativum HOM05D002650 ORTHO05D002924 4.6e-07 58.9 110 33.6
QL06p001588 Quercus lobata HOM05D002650 ORTHO05D002924 4.6e-07 58.9 116 32.8
COL.COLO4_21524 Corchorus olitorius HOM05D002650 ORTHO05D002924 6.0e-07 58.5 116 33.6
Lalb_Chr09g0319991 Lupinus albus HOM05D002650 ORTHO05D002924 6.0e-07 58.5 110 32.7
ATR0665G409 Amborella trichopoda HOM05D002650 ORTHO05D002924 7.9e-07 58.2 89 37.1
Medtr5g006660 Medicago truncatula HOM05D002650 ORTHO05D002924 7.9e-07 58.2 116 32.8
Sed0009300 Sechium edule HOM05D002650 ORTHO05D002924 7.9e-07 58.2 115 33.0
CANSAT78G1249 Cannabis sativa HOM05D002650 ORTHO05D002924 1.0e-06 57.8 118 31.4
Cfa008466 Carpinus fangiana HOM05D002650 ORTHO05D002924 1.0e-06 57.8 116 32.8
Manes.03G175500 Manihot esculenta HOM05D002650 ORTHO05D002924 1.0e-06 57.8 111 34.2
Potri.010G084100 Populus trichocarpa HOM05D002650 ORTHO05D002924 1.0e-06 57.8 114 31.6
Oeu010308.1 Olea europaea HOM05D002650 ORTHO05D002924 1.3e-06 57.4 110 31.8
Cpa.g.sc58.68 Carica papaya HOM05D002650 ORTHO05D002924 1.8e-06 57.0 116 32.8
Ca_24415_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 1.8e-06 57.0 116 32.8
Glyma.11G007500 Glycine max HOM05D002650 ORTHO05D002924 1.8e-06 57.0 116 32.8
PGR129G0015 Punica granatum HOM05D002650 ORTHO05D002924 1.8e-06 57.0 116 31.0
PGR142G2346 Punica granatum HOM05D002650 ORTHO05D002924 1.8e-06 57.0 116 31.0
TPR.G37883 Trifolium pratense HOM05D002650 ORTHO05D002924 1.8e-06 57.0 110 32.7
Glyma.01G235700 Glycine max HOM05D002650 ORTHO05D002924 2.3e-06 56.6 116 32.8
CiPaw.01G197800 Carya illinoinensis HOM05D002650 ORTHO05D002924 3.0e-06 56.2 116 31.0
Gohir.A09G217900 Gossypium hirsutum HOM05D002650 ORTHO05D002924 3.0e-06 56.2 116 34.5
Phvul.002G043200 Phaseolus vulgaris HOM05D002650 ORTHO05D002924 3.9e-06 55.8 114 31.6
MELO3C006514.2 Cucumis melo HOM05D002650 ORTHO05D002924 5.1e-06 55.5 119 30.3
Eucgr.B01054 Eucalyptus grandis HOM05D002650 ORTHO05D002924 5.1e-06 55.5 106 31.1
VMungo1215G1359 Vigna mungo HOM05D002650 ORTHO05D002924 5.1e-06 55.5 120 31.7
MSTRG.24731 Avicennia marina HOM05D002650 ORTHO05D002924 6.7e-06 55.1 116 31.9
Sc13g0004600 Simmondsia chinensis HOM05D002650 ORTHO05D002924 6.7e-06 55.1 116 30.2
PSO210G7121 Papaver somniferum HOM05D002650 ORTHO05D002924 8.7e-06 54.7 115 30.4
PSO832G4510 Papaver somniferum HOM05D002650 ORTHO05D002924 8.7e-06 54.7 115 30.4


User provided reference genes

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