Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 0.0e+00 1104.0 551 100.0
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 4.7e-47 193.4 512 33.4
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 4.4e-45 186.8 503 32.8
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 4.2e-43 180.3 248 43.1
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 5.6e-40 169.9 597 30.7
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.3e-39 168.7 466 30.9
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 6.9e-38 162.9 624 28.2
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.1e-35 155.6 486 32.3
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 2.4e-35 154.5 600 28.3
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.0e-33 147.5 227 44.1
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 3.9e-33 147.1 561 26.7
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 8.7e-33 146.0 224 43.3
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 1.1e-32 145.6 656 26.2
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.5e-32 145.2 476 30.0
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 7.4e-32 142.9 313 36.1
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 6.2e-31 139.8 83 77.1
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 6.9e-30 136.3 211 46.0
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 2.0e-29 134.8 291 36.1
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 2.6e-29 134.4 227 39.6
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 9.9e-29 132.5 575 27.0
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.3e-28 132.1 289 35.3
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.7e-28 131.7 236 36.4
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 3.8e-28 130.6 581 27.0
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 4.9e-28 130.2 85 68.2
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.9e-28 130.2 303 34.7
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 8.4e-28 129.4 574 28.2
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 1.4e-27 128.6 79 72.2
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 5.5e-27 126.7 172 45.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 7.1e-27 126.3 222 39.6
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 2.7e-26 124.4 210 41.9
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 2.7e-26 124.4 82 72.0
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 1.0e-25 122.5 76 73.7
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.3e-25 122.1 76 72.4
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 1.3e-25 122.1 76 72.4
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 1.3e-25 122.1 76 72.4
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.3e-25 122.1 76 72.4
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 6.7e-25 119.8 78 67.9
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 6.7e-25 119.8 290 33.1
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 6.7e-25 119.8 76 72.4
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 8.7e-25 119.4 74 75.7
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 8.7e-25 119.4 76 71.1
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.5e-24 118.6 76 71.1
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.5e-24 118.6 82 69.5
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.3e-24 117.5 376 29.3
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.3e-24 117.1 138 46.4
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 5.6e-24 116.7 84 69.0
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 5.6e-24 116.7 305 32.8
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.6e-24 116.7 82 65.9
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 7.4e-24 116.3 85 64.7
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.3e-23 115.5 70 75.7
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 2.1e-23 114.8 69 75.4
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 2.8e-23 114.4 76 71.1
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 3.7e-23 114.0 82 64.6
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 3.7e-23 114.0 73 72.6
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 3.7e-23 114.0 66 78.8
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 8.2e-23 112.8 80 65.0
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.1e-22 112.5 233 35.6
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.1e-22 112.5 73 71.2
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.4e-22 112.1 76 71.1
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.8e-22 111.7 74 71.6
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 1.8e-22 111.7 235 35.7
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 2.4e-22 111.3 71 74.6
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 3.1e-22 110.9 66 75.8
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 4.0e-22 110.5 598 26.8
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 6.9e-22 109.8 73 69.9
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.5e-21 108.6 202 36.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 2.0e-21 108.2 181 38.1
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.7e-20 105.1 198 38.4
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.2e-20 104.8 72 66.7
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 2.2e-20 104.8 89 59.6
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.9e-20 104.4 72 66.7
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.5e-19 101.3 71 64.8
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 3.2e-19 100.9 70 65.7
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 5.5e-19 100.1 297 31.3
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 9.3e-19 99.4 305 31.5
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.7e-18 97.8 63 69.8
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.0e-17 95.9 60 75.0
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 1.0e-17 95.9 77 57.1
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 1.8e-17 95.1 77 57.1
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.1e-16 92.4 61 65.6
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 9.7e-16 89.4 61 63.9
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.3e-15 89.0 66 60.6
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 4.8e-15 87.0 273 31.9
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.1e-14 85.9 75 57.3
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 9.0e-14 82.8 54 66.7
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 3.4e-13 80.9 56 66.1
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 3.4e-13 80.9 54 68.5
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 2.2e-12 78.2 58 60.3
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-11 75.9 137 39.4
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 9.4e-11 72.8 63 55.6
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 3.0e-09 67.8 43 67.4
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.5e-08 65.5 61 55.7
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 1.5e-08 65.5 180 32.8
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 2.5e-08 64.7 43 72.1
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 3.7e-07 60.8 76 44.7


User provided reference genes

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