Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-109 399.8 201 100.0
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 6.1e-69 264.6 208 67.8
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 6.8e-68 261.2 208 67.8
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 2.0e-67 259.6 207 65.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 2.6e-67 259.2 210 67.1
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 2.2e-66 256.1 207 67.1
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 2.8e-66 255.8 205 66.3
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 6.3e-66 254.6 208 66.8
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.4e-65 252.7 214 64.5
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 3.1e-65 252.3 164 76.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 4.1e-65 251.9 160 78.8
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 7.0e-65 251.1 207 65.2
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 7.0e-65 251.1 207 65.2
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 2.0e-64 249.6 161 78.3
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 2.0e-64 249.6 161 78.3
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 2.7e-64 249.2 161 75.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 2.7e-64 249.2 214 64.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 3.5e-64 248.8 164 77.4
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 4.5e-64 248.4 214 63.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.7e-63 246.5 161 76.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 3.8e-63 245.4 183 71.6
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 6.6e-63 244.6 208 62.5
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 6.6e-63 244.6 208 62.5
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 6.6e-63 244.6 159 75.5
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 8.6e-63 244.2 182 69.8
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.1e-62 243.8 161 77.0
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.5e-62 243.4 161 75.8
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 1.9e-62 243.0 214 63.1
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 7.2e-62 241.1 212 62.7
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 4.7e-61 238.4 161 74.5
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 6.1e-61 238.0 161 73.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 6.1e-61 238.0 252 55.6
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 8.0e-61 237.7 168 68.5
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 8.0e-61 237.7 147 79.6
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 8.0e-61 237.7 147 79.6
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 1.0e-60 237.3 161 73.3
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 1.4e-60 236.9 201 63.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.4e-60 236.9 201 63.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.8e-60 236.5 176 67.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.8e-60 236.5 201 63.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 2.3e-60 236.1 210 59.5
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 3.0e-60 235.7 151 77.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.2e-59 233.8 161 73.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 1.2e-59 233.8 210 60.0
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.5e-59 233.4 185 65.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 2.0e-59 233.0 210 60.5
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.6e-59 232.6 255 55.3
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 2.6e-59 232.6 210 60.5
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 4.4e-59 231.9 159 73.0
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 7.5e-59 231.1 161 72.0
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 4.9e-58 228.4 158 72.8
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 8.3e-58 227.6 154 74.0
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.3e-58 227.6 206 61.2
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.4e-57 226.1 207 59.4
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 2.4e-57 226.1 147 76.9
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 5.4e-57 224.9 173 67.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 7.0e-57 224.6 158 72.8
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 7.0e-57 224.6 159 72.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 7.0e-57 224.6 194 63.4
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 1.6e-56 223.4 162 71.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.7e-56 222.6 196 62.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 5.9e-56 221.5 189 61.9
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 5.9e-56 221.5 159 71.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 7.8e-56 221.1 161 68.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 7.8e-56 221.1 159 71.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 7.8e-56 221.1 154 68.2
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.0e-55 220.7 208 58.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 2.9e-55 219.2 204 58.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.1e-54 217.2 151 72.8
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.9e-54 216.5 159 67.9
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.3e-54 215.3 157 69.4
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 7.3e-54 214.5 161 68.9
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 7.3e-54 214.5 267 49.1
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.1e-53 213.0 197 57.4
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 4.7e-53 211.8 162 66.7
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.9e-50 202.6 160 65.6
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 8.3e-50 201.1 192 57.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 1.1e-49 200.7 178 60.7
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 1.4e-49 200.3 214 54.2
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 2.7e-48 196.1 187 57.8
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 8.6e-47 191.0 131 71.8
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 8.9e-44 181.0 173 57.2
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 7.5e-43 177.9 156 58.3
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.3e-42 177.2 153 58.8
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.9e-42 175.3 158 60.1
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.9e-41 173.3 126 65.1
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.1e-41 172.2 154 57.1
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 7.0e-41 171.4 160 56.9
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 9.2e-41 171.0 162 54.9
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 9.2e-41 171.0 161 58.4
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 6.0e-40 168.3 159 59.1
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 7.8e-40 167.9 156 55.1
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 5.1e-39 165.2 175 50.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.6e-37 160.2 159 54.7
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 7.1e-33 144.8 109 62.4
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.7e-31 140.2 128 56.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 6.8e-28 128.3 160 48.1
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-25 119.8 137 49.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.7e-24 116.3 109 54.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.0e-24 115.2 131 47.3
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.5e-22 109.8 105 49.5
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-20 104.4 143 39.2
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-20 104.4 103 49.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 7.1e-17 91.7 68 64.7
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 4.0e-12 75.9 48 70.8
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 3.9e-07 59.3 42 64.3
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.3e-06 55.8 32 75.0


User provided reference genes

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