Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 0.0e+00 1463.4 728 100.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-219 766.1 741 56.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.2e-212 743.8 744 54.3
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.4e-211 740.3 735 54.3
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.3e-211 739.6 730 53.4
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 6.8e-211 738.0 735 54.1
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.1e-205 720.7 733 52.3
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.5e-202 710.3 857 48.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 7.6e-202 708.0 737 52.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.7e-198 696.8 733 52.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 5.1e-198 695.3 745 51.7
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.9e-197 693.3 740 50.8
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.5e-197 693.0 748 51.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.3e-197 692.6 737 50.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.6e-197 691.8 740 50.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.1e-196 689.9 724 51.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.8e-196 688.7 723 51.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 5.3e-195 685.3 742 52.3
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 4.5e-194 682.2 729 49.7
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 6.7e-190 668.3 741 49.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.6e-188 663.7 740 49.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.1e-188 663.3 724 49.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.4e-187 660.6 725 51.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.8e-187 660.2 764 49.2
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.4e-187 659.8 727 51.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 5.3e-187 658.7 735 49.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-186 657.1 734 50.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.4e-184 649.8 734 49.2
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.2e-184 649.4 732 48.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.5e-183 646.0 739 48.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.7e-182 641.7 729 49.5
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 8.7e-182 641.3 729 50.2
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-181 640.6 736 49.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.3e-181 639.4 719 50.6
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 8.2e-180 634.8 736 49.0
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.1e-179 634.4 582 57.2
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 4.0e-179 632.5 720 49.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.3e-179 632.1 736 48.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.0e-177 627.9 738 48.9
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.9e-177 626.3 721 49.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.6e-175 619.0 722 48.5
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.9e-174 615.9 715 48.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.1e-174 615.5 723 48.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 9.7e-173 611.3 755 48.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.8e-172 609.8 711 48.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.8e-172 609.8 725 48.3
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.7e-172 609.4 720 49.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.8e-172 609.0 755 48.1
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-170 603.2 754 47.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.4e-170 602.8 730 46.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.5e-170 602.4 714 48.3
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 7.6e-170 601.7 700 48.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-168 596.3 724 46.0
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 9.3e-168 594.7 714 48.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.7e-167 593.2 722 47.1
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.6e-167 592.4 721 47.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.9e-166 589.3 714 48.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.1e-165 587.8 728 44.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-165 586.3 723 46.2
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.3e-165 586.3 716 48.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-164 583.9 719 47.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.7e-164 582.8 701 48.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 6.3e-164 582.0 732 44.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.4e-163 580.1 611 51.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.9e-163 578.6 711 47.0
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.9e-163 578.6 724 46.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.1e-163 578.2 744 45.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.7e-162 575.1 751 44.7
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.0e-161 572.4 721 45.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-160 569.7 718 46.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.3e-157 559.7 731 43.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-155 554.7 703 45.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.4e-155 554.3 713 46.0
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 6.5e-153 545.4 718 44.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.9e-152 543.9 712 45.2
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.2e-152 542.7 712 45.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-149 534.6 723 45.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.6e-149 533.5 728 43.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.3e-149 533.1 716 45.0
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-147 528.1 746 43.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-147 527.7 736 44.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 3.1e-147 526.6 699 44.5
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 9.1e-147 525.0 732 43.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.6e-146 524.2 729 41.8
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 7.7e-146 521.9 765 42.6
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.2e-145 520.4 522 55.2
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-144 517.3 743 42.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.0e-142 511.5 744 41.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.4e-142 511.1 735 41.9
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.0e-142 510.0 691 45.3
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 5.2e-142 509.2 742 41.5
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.3e-141 506.5 747 41.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.7e-141 505.8 746 42.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.4e-139 500.4 545 51.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.1e-139 499.6 722 41.3
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 4.1e-139 499.6 439 58.1
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 9.1e-139 498.4 722 40.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-136 491.5 725 42.2
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-136 491.5 544 50.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.7e-132 476.5 730 38.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.7e-130 468.8 698 41.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.5e-128 462.6 683 40.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.4e-123 447.2 428 53.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 5.4e-123 446.0 704 39.3
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.6e-121 438.7 609 41.7
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.5e-120 437.2 507 50.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.4e-118 431.4 470 52.3
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 4.0e-118 429.9 685 38.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 5.8e-117 426.0 575 44.5
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 7.5e-109 399.1 722 36.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.5e-106 390.2 421 51.8
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 4.6e-106 389.8 510 44.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.3e-104 382.5 494 46.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 6.2e-103 379.4 732 35.4
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.4e-99 368.2 736 33.7
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 6.0e-98 362.8 590 38.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.1e-97 359.8 376 52.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.0e-94 350.1 742 33.4
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 9.9e-93 345.5 371 54.7
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.6e-90 338.2 379 49.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.8e-78 298.1 301 53.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.7e-74 284.3 671 32.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.5e-72 277.7 726 31.1
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.1e-71 272.7 402 42.3
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 3.8e-68 263.8 809 28.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-58 232.3 629 27.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.3e-57 228.0 393 39.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.1e-57 226.9 180 61.7
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 5.0e-44 183.7 141 59.6
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.0e-44 183.7 274 38.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-43 181.4 240 45.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.7e-41 173.3 248 41.9
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 8.8e-41 172.9 551 27.6
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.3e-40 171.0 508 27.4
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.2e-39 168.3 257 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-38 165.2 586 25.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-38 164.5 213 40.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-37 162.2 102 68.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-36 157.9 102 67.6
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.3e-32 144.4 202 42.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.1e-30 137.9 94 67.0
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.2e-27 126.7 332 32.5
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.8e-25 122.1 147 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.7e-23 114.4 198 32.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.2e-19 101.3 147 42.2
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 9.4e-19 99.8 242 33.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.8e-17 95.5 370 24.9
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.8e-15 87.4 228 29.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 7.0e-14 83.6 85 50.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.0e-13 82.0 176 33.5
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.9e-13 80.5 136 36.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.9e-13 80.5 329 23.7
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.7e-12 79.0 68 50.0
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 3.8e-12 77.8 152 38.8
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.6e-12 76.6 65 63.1
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 3.3e-11 74.7 197 28.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 7.2e-11 73.6 76 50.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.0e-09 69.7 64 54.7
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 9.8e-08 63.2 109 28.4
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 1.3e-07 62.8 58 53.4
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.4e-06 58.5 70 38.6


User provided reference genes

Program Settings