Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 3.0e-60 235.0 117 100.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.2e-16 90.1 100 55.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.1e-16 89.4 101 55.4
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.7e-16 89.0 105 52.4
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.3e-15 86.7 126 45.2
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 3.9e-15 85.1 105 50.5
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 5.1e-15 84.7 121 46.3
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.5e-14 83.2 126 43.7
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.5e-14 82.4 129 45.7
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 3.3e-14 82.0 105 49.5
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 3.3e-14 82.0 130 44.6
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 4.3e-14 81.6 127 44.1
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.3e-14 81.6 84 57.1
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 4.3e-14 81.6 125 40.0
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 7.3e-14 80.9 65 66.2
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 7.3e-14 80.9 79 59.5
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 2.8e-13 79.0 98 49.0
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 3.6e-13 78.6 128 46.1
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 3.6e-13 78.6 106 48.1
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 8.1e-13 77.4 117 43.6
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 8.1e-13 77.4 60 65.0
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 8.1e-13 77.4 114 45.6
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 8.1e-13 77.4 114 45.6
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.1e-12 77.0 105 47.6
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.1e-12 77.0 124 45.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.4e-12 76.6 127 43.3
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.8e-12 76.3 92 48.9
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.8e-12 76.3 92 48.9
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.8e-12 76.3 101 48.5
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 2.3e-12 75.9 130 40.0
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.3e-12 75.9 84 56.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.3e-12 75.9 84 56.0
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 4.0e-12 75.1 66 62.1
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 4.0e-12 75.1 75 58.7
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 6.8e-12 74.3 64 65.6
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 8.9e-12 73.9 92 46.7
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 8.9e-12 73.9 120 42.5
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 8.9e-12 73.9 92 46.7
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 8.9e-12 73.9 124 42.7
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 8.9e-12 73.9 126 41.3
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 8.9e-12 73.9 85 51.8
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.5e-11 73.2 92 46.7
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 1.5e-11 73.2 120 43.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.0e-11 72.8 100 48.0
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 2.0e-11 72.8 128 43.8
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.6e-11 72.4 92 47.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 4.4e-11 71.6 65 58.5
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 4.4e-11 71.6 65 58.5
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 5.8e-11 71.2 65 58.5
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 7.5e-11 70.9 78 55.1
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 7.5e-11 70.9 61 63.9
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 9.9e-11 70.5 75 52.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 60 61.7
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.3e-10 70.1 80 55.0
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.7e-10 69.7 96 44.8
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.7e-10 69.7 96 44.8
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.7e-10 69.7 91 48.4
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 6.4e-10 67.8 77 54.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 6.4e-10 67.8 76 51.3
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 6.4e-10 67.8 102 44.1
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.1e-09 67.0 54 63.0
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.4e-09 66.6 75 52.0
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.4e-09 66.6 61 59.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.9e-09 66.2 97 45.4
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 3.2e-09 65.5 55 67.3
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 7.1e-09 64.3 86 48.8
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 1.2e-08 63.5 53 60.4
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 1.6e-08 63.2 62 53.2
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 2.1e-08 62.8 72 55.6
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.1e-08 62.8 85 48.2
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.7e-08 62.4 91 44.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.0e-08 61.2 75 52.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 6.0e-08 61.2 76 50.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.0e-07 60.5 61 55.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 5.1e-07 58.2 84 42.9


User provided reference genes

Program Settings